RNA id: TU20187


Basic Information

Item Value
RNA id TU20187
length 2448
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G16250
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32434236 ~ 32436683 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaaataaaagaaaatgcataaaaacaggTATGTCAATActcaatcatatatatatatatatttttaaacctccattgtatttgtttcaacaTATAATGCAAACTCTGCTACTGTAAGCACATATTTAGGTGCCAAGGCTTTTACCCCCGACACAAACACCAGTGTCTTTGCCTCACAGGGTCTACAGTGTCCATATTGTTTCACTACTAGCAGTGCTCTGTCCTTGTTTTTATGCACTTAAAATGTAAGCAGCCCACAGATGTAAGCATGATAATACAACCACCTCTTTCTCTGCTGGCAGAATCGACTCTTCTATGTGTGTCGGTCccatcaaaatacaaaatgaaatgaaactttATCACCAGGCAGCCTCGAGGTTTAGAGCACCAGGGTACCATCTCAAACTGACTATTTCCGGAACAAAAGGCATACAAACACCTCAGAATAAACAGGCCTCGCTGCAGCCATTGCTCACATCACCGCAAACAACACAGGAATTTACATTCAAGACATTctgactttattttatataaaccagtacaataaaaaaaaattgatatacagtttatttatatatttatatatataatatagtgttGGAATTTAGCAAACGAAACGGATACAAGATTTCCTCCGTGATTGTGTTAAAGCAGCGGtttcattgcattgcattgcaaagTGCAGGTATCATGCCCTAATACGCATAGCTAAAAACTGCATGATGTCTCAACAACACGATATATATACTGGTTCGAAGAGCACTGCAAGATgtcacaccccccccccccccccccccccccccccccctaggCTTTGTTTATGATCCTCCCTGTTAAAGAGCTATGAAGCAGCATCCTAAATACTAATCAGACTattaaagcagaataaaatgCAGATGTTCACATAGCTGTGGTGCTCtatataaaacagctgtgtctCTTGTTCAATGTGTTGTAAGGTGTCCTGTGAAAGAGTCGGCTCCCCGGACCCATTTTACTGTACTACTATGGGTcatggcagtttttttttgtttttttttctcgaGTCGCTGAACTGAATTCCTTTTAGAGGCCAGGAATGACAACTGCATCCGTTCCCCCTGGCCGCTGCAAAAGAGCACCCGGACAACGGCTGTGCACAGGCACTCGATGAATCCGAACAAGATGAGGTGAAATGAGTCCATTCTGGTTAGAGTTTAGCAGATCCACACATCCCTCTGTCACAGAGAAGAGGCAGCCAGGCTACAGTTGATTTGGGGATTGGAGACCGGTTTGATTAGGCCACCTGGCTAATGTCACAGCCAGTATCTCTCAGGCCAGTGACTGCTCCTCAGCTCCACCGGCTACAGGGCTTCCATTTTGTGTTCAGATCACCTTTGGCCCAGTTATACTGTAGTCGCAGGAAAAGCCACTTTAACTACAGTCCTACAGGAGACACTACCCCTATCTATGCACCATGGTCTCATTAACCTGTCAGTCAAGCACCACATCACTCAATCAACCCTTCAGGAGGCAGCATCTGTGAGGTGGAGAATGCGGCGGGGGAGACACGTAAGTGACGACAAGGGACAGGCCAAGCAAGATTAAATATTTGGTGATTATGCCTGATTCTTTTGGGGTGCCAGCTTCCTTCCAgaactctctctgtctccaccATCTATCCAACACTGTCTAGACATCACAAACCAATGGCTGCACGGTAACCCATGCAGTTGATCGTAGGATTTACTCAGGCTGGATAGGTTACTACAATGAATGCAGATTGAAGTCTATGGTGTTCATTTAGTCTGCACCGTTAGAGGTTTGTTGTCATAGTCTCGGCCAGGTCTGTGACGTTTAATGGTGGCAGTAAAACCCACCTCTGCCACACAAATGACTGGGGGTGTGAGACCAAATTGGTGGGAGCCTGAATGTTTGCCGTCAGCTATATGAAGGAGACACTGAAACACATACAGACTAAGCCTTTTCTAAAATGAATCTACAGACGACATCAACACTGCAGTCCCCTGAAACTGTGAAAGCCTCACTGCCAATAGCAACCAACAACCAAGTATCCTGACTGCACACCAGCTCTGCCCCAACACAGCTTACCGAACCCTTCAGATGCTATATTCTGACATGACCCAGTTCTAATTCAGAAAGCACCTACTTACTATTGATAGACCAACGGCCCAATTCTGGTAGCTCAGGAATTAAGAAACTCGTTGTATTGTTTAACACACTGTCAGAACAGGAAGGAAAACAACTTGTGAATGGAAGACGTTGGACTCTCAAGATAATTACACGCCGAGTGGAAAGATGGAAAATGGGTAGTACCCAAATCTACAGCTGTACAGTTGCGATATGTTAACACAGGTGATTGTTGGCTACCTGACGTTCTGAATACAGCGGGgtgtatttttgcagtttttgtcGGCATGGCTGGGTGGTTTAGAAATGGAAAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20186 lncRNA downstream 6156 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 8280 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 17792 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 40856 32393142 ~ 32393380 (-) True G16244
TU20119 lncRNA downstream 171570 32261549 ~ 32262666 (-) True AMCG00016847
TU20246 lncRNA upstream 418098 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 422558 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 547571 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 818970 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 847331 33284014 ~ 33284227 (-) True G16377
AMCG00016850 mRNA downstream 51041 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016849 mRNA downstream 109075 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016846 mRNA downstream 150196 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016847 mRNA downstream 166268 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016837 mRNA downstream 431701 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016856 mRNA upstream 1553 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 33212 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016859 mRNA upstream 65882 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016858 mRNA upstream 71666 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016857 mRNA upstream 108936 32545619 ~ 32546814 (-) True AMCG00016857
TU20184 other downstream 10798 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 1904736 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2231885 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3648729 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 5005585 27424893 ~ 27428651 (-) True G15076
TU20188 other upstream 60824 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 60824 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 739393 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 989805 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 1052042 33488725 ~ 33513579 (-) False AMCG00016891

Expression Profile