RNA id: TU20241


Basic Information

Item Value
RNA id TU20241
length 1466
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G16290
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32857551 ~ 32859016 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTTAGAATTGCATGCATGACAGCCATATTTCAAAGTTACACAATCATGGGAAAACAACCGTAGAAATatagtttattgtatttgtcGCCTGACGGAATTATTAATTCAGTGACAACAATTATGTTTACAAGTCATTAATATGCACCAGgcattttatattcataaatatgtgaatttaaacatttctgacattttcCAGAAGAGAGTTCTCTACAATAGAAATATTCTGATATccaaaatcacatttttgtgGGAGGTGGGGGTTATTGATGACGTGAGATCCGGGGAAAAGAATGTCTAGAAATTCACAGTAGTGTTTTCCCCAAAGTATTTTCACCGTTTATTCCAGGAACGTATTCTAACATTGCACTGCACTTGTGCAGATTTCAGCTCTGCAGAAACATCTCACCTCAACCtatgctctgtttttttttttttaataagtaggAATAAGGAAAGATTGGGGTGAATCAACCTTCGATAGAAAGAAATTAGAGCATGGGAATAACAGATGGAcatacacagagaaagagagagattggaGGAGGGTGTAGGAGAATGCTACAGAACACAttctatactgtatataactGGAAACACTGAAGTATTAAACTGTACAAGGTATTCCTGTAAAGATCTCTCTTGATTTAGACATGAAAGGCCAAGGCATTCACAGAGCAGCCTGTGTCAGTAAGAACCCGTACTGTAGTTATCTGATTCACTGCAGCGTGAGCGGAGGGCTAGACATTACTTCTTGCAatagcctgtttttttttcccttctacTGGTTCCCTATACTTctcaatgttttttgtatttattccaaccttttgtacaatgtatttttggtttttgtatttatttacattctttTTGCCCGCTATAATACTTAATTGTTGTCAGGCTCTCACAAGTACTATAGTTTGCAGATGTCCCCCTCTAGCACTCATGGGAAATAATAGTGTGAAAATCTGAAGTTTTCTTTCGCAGCTAAAGGCATCTCCAGAAGCGcaaacacacgcacgcacacgatTCTCCTGATACAGGACAGCCATTGACTAGTTGTTCCATTAaattttttatgattattattattattaatattaatattgattgtttatttaatcattcaCAAGGTTTCTGCACTAATTGCCTGTGAAGTTCTTCTATAAGGGTGCACTTTACCGTTATTCAATCTTTATATACATaatctttttattataaaatgtattcatatatatatatatatatgtgtgtgtatgtatgtatgtatgtatacattttctgttatttttttatttttgttttttttgggtgtgtgggggggtttgTCTCTGACTGATGATACTGGATAATTATTTGTGAGTAGTTGTCCTTATTAATAGAAAATAGCAAAccgttttttgtctttttcgtggattttttttttccaagcaaataagtaaatgaataataataaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 414966 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 594879 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 604322 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 1102124 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 1213036 31615220 ~ 31644515 (+) True G15995
TU20283 lncRNA downstream 122763 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 320689 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 321223 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 466078 33325094 ~ 33328342 (+) True G16395
TU20376 lncRNA downstream 469781 33328797 ~ 33333746 (+) True AMCG00016880
AMCG00016865 mRNA upstream 1250 32810085 ~ 32856301 (+) True AMCG00016865
AMCG00016863 mRNA upstream 80079 32773075 ~ 32777472 (+) True AMCG00016863
AMCG00016861 mRNA upstream 250169 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016854 mRNA upstream 354179 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016855 mRNA upstream 359043 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016866 mRNA downstream 36743 32895759 ~ 32921227 (+) True AMCG00016866
AMCG00016872 mRNA downstream 127564 32986580 ~ 32989958 (+) True AMCG00016872
AMCG00016873 mRNA downstream 153902 33012918 ~ 33021870 (+) True AMCG00016873
AMCG00016875 mRNA downstream 176286 33035302 ~ 33109567 (+) True AMCG00016875
AMCG00016874 mRNA downstream 289475 33148491 ~ 33151617 (+) True AMCG00016874
TU20240 other upstream 111 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 354295 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 354295 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 354295 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1123235 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 809613 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 1188355 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 1241299 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5637035 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 9532281 42391297 ~ 42397787 (+) True G17697

Expression Profile