RNA id: TU20246


Basic Information

Item Value
RNA id TU20246
length 2685
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G16292
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32854781 ~ 32857465 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgattttccaaataaataaataatcatcattatgAAAAAGAACTAATTCTTCAATACGAGATAAAAAAacgagataaaaaaagaaagaaaattcaAGTATGCAGTTTGTGAATGTCCCCCTTTTTCTCCCTGTTGATTTTTCAAAGCAGGTTGCCCATGACgtattgaacaaaacaaacaaaacaaaacaaaaaatcaaaaacaaaagccaacCAAAAatcaacaaaccaaaaaaagtatatatatttatatacctaaaattataaatattcagTTGTTTTTCTAAGTACAAGTTTGACATAAGTAAAACGGtctttttgttacatttacagtataGAACATAGCAATCTCTTACAGTATAGAACAGCAATCTCTTTAAGAGCACGCTTGAAAGCAGAGAAAAATCTATGGACAACTGTTTACCACAGGCGTGACAGGAAATGAGTCCAGGCTTCACACAGATAGCATCTTTACTGGGTGACTCCCCAAATACTGGAACGCAATGGGGGAAAGAGATTAATAACTGATCAGCGACCATAATATCGACACTCACTGGCCCAATCGCTTCACTTTAACATGTGAAGATGTTGCAGAAACAGATTTGATTATAGCCATCCCTTAAGTTAGATGATTTTAAAGTCTGCAGTGATTAATGGGGTTTCTTTATTTACTCCTGAACTGAGTTACTCCACCCCCCCCTTTGAAAAAGAAACTCTTTTTGAGTAGACATATTCTAAAAGGTCTCTGCATGCGGAACTTGCTTGCTTTTACAAACTTTGCTTTGTTTGCTTAAAACTGCACTGCGATAAAAATGAAAACGAGCTACGGTCTCTGTTCAGTTGACACTTTgagggcaggggggtgggggggcgaaCGAAGGCTGCAGACATCCCCCGGGGCTGCGGGTACACAGAGTGCGACTGCTGCATCCCCACATTGCAGGAGTGTGTGCAAGTCCAGttgttgttcatgtttttgCCCCCAGGGCTTGTTTTGTGAAGTATTGTCACAGCGAACATTAACACTCATGTGCTCTGGACAGATCTACATTTCTCCTCCCAGGAGTCCCACTCACTAACCAGGAGACCTGAAGCCTGTCTCTGCTGCCACCTGCCTCCacccctcctccccacccccaccccacccaagCTCCACCCAGATATCTACACATTCGACTCCACAAATGGTCTCTTTGGTTTAATAGGCGACGTCTGTCCCTGCCGGGAGTCCCGGGAGAGCTGTCTGTACATGCTGTCCTGGTAGGCCTGGGCAACGGGCAGTGTCCGCGCCACCTTGACATCTGGGTATGTGGGTACCTGGCTGACCCTCTCTAAGATGTCCCCACCTCCACCGCCCCCCACCCGGGAGCCGTTGGCCAGTTTGGACAGGGAGGGCTGTGGGGGCTGGGTGTAGTACTCATCGTCGAGCAGGTGGCCGTTCTGGGCGTTGTTGGTCTTGTTGTAGTAGGCGATGTTACccagggaggtgggggggctgtAGGAGGAGCCGCTGCCCCCGCCACCCACCTGCTGAATCAGATTGCCGGGGGAGGTGGGGCTGGTGATGACCGTGTCCAGGGAGGACACGGCCCAGGGCCGGGACGGCTGGTGGAGGTACTGCTGAGTCCGTGCCGTCTTGTCGATGATGCCCATGAAGGGGGTGGTCCGGGAGCGGGAGGTCTCTACCTGGTACACCCCGCCGCCCCTGCCGTCACCCCCACCGCCACCTTGCGAGGGGGACACGGGTGAGAGGTCGTCGCCGGAGCGCTCGTAGGATGGCTTCAGGGGGATCTCCATCTGCTGGATGGATGCTGAGGGCCGGAAGCCTGGGGCTAGGTTGCAGGCGGAGCCGGAGGACAGGCTGTTGCTGGATGGGGAGAAGCGCAGGCCCACGCTCTGGGAATGGATCAGGGGCCGAGGGGTCGGAGGGTGGGGCTTGATCTCAGAGGGGTTGGCGCTGACTGGCCGCCGTACTAAGTGGGGGATTTCTGGGGAGCCCAGCTGGCACTGGGGCAGGCCCACGGCACGCTCTAGCTCGTGTTTGGACACGGGGTAGTAGGCGGCCGATTGGCTGCGGCTGATCTGCGGGGTCTGGCCATAGCGCATCCCCCCGgggccccctcccccacctccaccacTGCCACGGTACGCTGAGGAAGGCCGCTGGGGGAGCTCCTCCTTCACCAGTCCTGAATCTACTCCCCCACCACGCCCGCCATGCTGGCAGATGGCCCCAGCGCTCAGACTGGCCTGCACCTGTGGCATAGGCCGGCCATCCAGGGAAGGTTGGTACATCAGCCGGCTCTCCACGTCCACTGAGCCGCCCTGGTAGCGGCTGCTGATGGGGTGTGCCATCTGGCCGTAGGCGCTGCTGCCCATCACAGCGCTGGAGTGCACCGCTGAGCTGGGCTGGTTAGTGCGCACAATCTGGGCCTTGGCCGGCTGCAGCCTCaggccctgctgctgctgctggtgctgggAGGACTGGGAGGACTGGGAGGTCAGCTGATAGGAGCGCTGGCTGCTCATCTTAGACAGTGGGGACTTGGGCCTCCCAGGCAGCTGTTCCTGCTGGTACCGCACAGGGGAGCCCGACTGGGGGCGGTAGAGGCAGATGCTCTCTGTGGGAGGGCTGGCCCTGTACTGGGGGCCCCGGCGCAGGGGGGACGGAGGGGGGCTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20187 lncRNA downstream 418098 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 426701 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 428825 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 438337 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 461401 32393142 ~ 32393380 (-) True G16244
TU20247 lncRNA upstream 1776 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 126789 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 398188 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 426549 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 434566 33292031 ~ 33292249 (-) True G16378
AMCG00016864 mRNA downstream 162430 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016862 mRNA downstream 264247 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016857 mRNA downstream 307967 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016858 mRNA downstream 321022 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016859 mRNA downstream 347462 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016867 mRNA upstream 5781 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016868 mRNA upstream 63540 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016871 mRNA upstream 64964 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016870 mRNA upstream 69566 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016869 mRNA upstream 74228 32931693 ~ 32934506 (-) True AMCG00016869
TU20188 other downstream 351529 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 355886 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 431343 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2325281 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2652430 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 318611 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 569023 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 631260 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1249225 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4900692 37758157 ~ 37758471 (-) True G17032

Expression Profile