RNA id: TU20247


Basic Information

Item Value
RNA id TU20247
length 2357
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G16293
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32859241 ~ 32861597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaaccatttataaataagtacattgtTCTTTCATACATACAGTTGATTGTACAGGTCACAATCTCTTTAGTTTTCATAAGATAAAAACgcattcttttttaatgtttttttttcttttttagttaaACTTTTATCACAGCAATCTGACAGCTCACATGTACAGACAATAGAACTCTGCGCAGcaagcaaatacattaaaataaaataaagttgtttaaaaaaaaatattataaaaaaaaatctagttttGCTTTTCCTCCTGTGAAATGGGATAGAACAGGTTAAGGATCTGAAAATGACAccagcccccagccccctcTTCCTCACTTCAATACAATATTGATATCACAATTCGcatcagtaaatatatatatgtatctatatatatgtatgtgtatatgtgtgtgtgtgtgtaagcccCGAAAAAGATAACAAAACATGCATTAGATTATGTACAGCAAAAATCCTTTACATcagaaatctaaaaaaaaaaaaaaaaaaaaaaaaagtcattttaaaaatgaccctttgtttttcaaacatcagttttaattacatttcagaactGAGTAATTAATGAAACCTCTCCTCCTGGCAGTTTTCAATGGAAAAAGCAATAATCCAGATGCTGTACAGAGagtgtcttttttgttttgcacatggGAAGCTGTGTCAGGGGACCAGGTGTCCAGAATTTGCCTAATACTCTCCCTTTCCCTCACCTGCTCTGAAAGGCAGTGATTACGATGCACACCTGTCTTGCATCCAGCCCAATGAGGGCTAATATAAACCCAgtgaaagattattttttttcccccattacaATTTTGCAGCAATAAAGTGAACCTGTCCAATTAAATGTGTGAATGATCACTGACATGCTTGACTCCAGTAACTGCTGTATAATAGCAAAAGAGTATTCAAGCTCATCCTTTAGTgaaatcttattttatatacaccGATGTAATACCATTTCTCATCGTTCGCTTTTACACCTCTAGAGAGGGCAGCCTAATGCAATTCCATACAGCGATGAAACCTCTACACCTCCAAAGGCCAGAGACCACACCTGGTTCATCTATAAGGGTTCTGCTTATCCTTGGGTTTAAGCTCCAACCTGGACGGCAAAAGGAGGAGACAAACCGCAGAAGAGGGCTCTGGGAAAAATAGGAAGaggaattgaaaaacaaaaactaaagcCCAAAACAGAAGTCCATCATGGCTTGCAATACAGACAGGAAAGCAGAAGGTTCCTACTGAAGGAAGACAGGGGGAAGGGTTTGGTTCATAGTGCAACACTGTAAACAGCTCCTGACCAGTACCTCAGCCCCCTGTGCGCACAGCCTGCACTTTCAGGAGATCAGACCTGGAAGTGCAAAATCCAGGCCAACACATTCGGCTCCTGGAAAGTGCTGCCCAATGCGGCTCAGGCTCCAAGAAACACTTACGTCACTAACTGTCAACAGAGCTTCGGTCAGATGTGTGACTTGGAATGGATCGGCCAAAGATTCCCATTAAATAACTGCCCTTTGCGTCTTTAAAGCACCGCTCTGAAGCTTCATTGGTGGTGGTCTGTGAATCGGatccagtttttattgttttttaaaattggATTCAATCACACGGCAATCAGGCAATAATATATGTTTAGCCAAGGTTTCATGGGTGCCTTTCAGTTCAGAGGACATGTGCAAATGTACGCTACCTACCATTATGTACAATGGCCATATGCCATGAACATGTGAGCACTGTGTAagcaaaatctaaataaaaaataaagttaaaaggAATGtgaaatttgtattaatatgtacAACTGTGTAACTGATCACTTGAGACCATATTTCCTGTCCCCTTTAAAATGCCCTACTTAAGGATGCTCAGTGACCTTGTGAACGCCTGGGGGCTTCTCTGGTTTAGTCCCCAGACTTCTGCTTTCTCTCAGATAATAGAAATAATGGATCAGCATAAAAGTAGGGTATGTAAATTAAGGGTActgttttgctttgaaaagtAGGCTACCTACTCTTAGATTCCTGTCACAGTACGCTCATGTGGCAGTTTGGACACCTGAACACCTAACAGGTACTCTGGATTGTGTGCAATCTGAGGGATCCTAGCACTGGGGACTGAAGTTCTTAAATACTATACATAGAACACCACTTCCCAGCAGTCAACTTCAACAATGCTCCTGCAGTGAATGCACATTGAATCATTTTCAGATCCAGGTGGATTTCCTATTCTTTTGTTGAAAACTGCCAGGAAGCGAGAGAGAGGAATAgatgcagggggggggggggttcttaaAAGTAAGAGGTGATAAAATGTCCCAATCTTTTGGCCACTATGTACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20246 lncRNA downstream 1776 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 422558 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 431161 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 433285 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 442797 32416191 ~ 32416444 (-) True G16245
TU20285 lncRNA upstream 122657 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 394056 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 422417 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 430434 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 463489 33325086 ~ 33328341 (-) True G16422
AMCG00016864 mRNA downstream 166890 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016862 mRNA downstream 268707 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016857 mRNA downstream 312427 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016858 mRNA downstream 325482 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016859 mRNA downstream 351922 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016867 mRNA upstream 1649 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016868 mRNA upstream 59408 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016871 mRNA upstream 60832 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016870 mRNA upstream 65434 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016869 mRNA upstream 70096 32931693 ~ 32934506 (-) True AMCG00016869
TU20188 other downstream 355989 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 360346 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 435803 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2329741 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2656890 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 314479 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 564891 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 627128 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1245093 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4896560 37758157 ~ 37758471 (-) True G17032

Expression Profile