RNA id: TU20326



Basic Information


Item Value
RNA id TU20326
length 2808
RNA type TUCP
GC content 0.56
exon number 1
gene id G16356
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33176076 ~ 33178883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcCAAGCTTAGGTTTGAGGCAACGTGGTGTTCAGACAGTATCATTTAATCAATGAAACACTAAGGCACCAGAGGGTGGCCCCCTGCCCGCACGACCGGGGTACCGCTCAGAAACACCCCCactgatgagagagagagagaaagagagagagagagagagagagagagagagaaagagagagagagagagagagagagggttgtgGGGCATCCAACACCGCTTTCAATATGAAACAGATTCCTTCTCATACATCAGGGCAAAATGATTACAGATCTCGGTCCGACAGAGAAAGTCCAACTGTGTGCCGCGTCAATGCTGCCAACAAAAACACCAGAGGGAGAGACCATAGCTCCATTTATGGAACAAGTGTTTACCAAGGCTGTTTCactcttttctttaaatacaaatatataattatatatcatatgtatatatttttacaaatgctatgtacattacattgaattacaCAACTGCCAAGTTAATCGACCTAAAAAATAAGTCTGTAATAAAACTGAGTTCATACTTTCAAGCATTACAAACCCTTTCAATTCCAAACTGGTCCCTTGcttatatttatgtttgtttttaactctgATGCTTTATAaaggagatgtgtgtgtgagtgtgtgtgtttgtttgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagtgagtgaatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgagtgtaggGGACTTCTGCACTCAAAAAGCTGGTCTCCATGCCAGATCAAGTGTCTGTAAAGTCTGGGTTTATCTGGATTCAGTGTAAGAAGgggttcttaaaaaaaaaagtcataataaaataataaaaacacaacttcGGGAGTCTTTGACACAATGAAAAGATGGTGAGCCCGAGTGCCATTTGGCAAAAGCAGGCTGACGTCCAGTTGGCTCAGACTGTGGTCTCCCCCTGCTTACTGTTGGTGAGTCTGGTGTAAAACTTGCGCCACGATTGTAAAGTCTTACCAGACCAGATCCAAAACCCGGAGGTGATCCCCACAATCAGAGTCATGAGATATTTGATCATGTAGACGGTAAAATCCGGAGTCATCCGCGGGGTGTAGTGCATCGGGCAGGGGATGGCCAGGGTCTTGCAGTTGTGGCTGATCCAGCTCCTCTCCCAGTGCTCTCGGAAAGCCTGCTCGTAGAAGAAGCAGGCGATGACGACGGTGGCCGGCACGGTGTACAGCACGCTGAACACCCCGATTCGCACCATGAGCCGCTCCAGCTTCTCCGTCTTAGTGCCGTCGTGCTTCATTATAGTGCGGATGCGGAACAGAGACACAAACCCGGCCAGCAAGAAAGAAGTGCCGATGAACAGGTAGACGAACAGGGGTGCCAGGACGAAGCCACGCAGGGGGTCCAGGTTGTTGAGCCCGACGAAGCAGACGCCGCTCAGCAGGTCGCCATCGATCTGGCCCATGGCGAGGATGCTGATGGTTTTGACAGCTGGCACAGACCAGGCGGCCAGGTGGAAGTACTGCGAATTGGACTCAATGGCTTCGTGTCCCCATTTCATCCCCGCCGCCAGGAACCAAGTCAGCGAGAGGATAACCCACCAAATGGAGCTGGCCATgctgaaaaaatacaacatcATAAACAAGATCGTGCACCCCTCCTTCTTGGTCCCCTGCACCACGGTCTTGTAGCTCTCCGGTGCGAAGCGCTCGTTGCAGACCACTTTGTCATCCAGGAAGAAGCCCGCTATGTAGGCGATGGAGACCATGGTGTAGCAGCCCGACAAGAAAATGATGGGCCGCTCGGGGTATTTAAAGCGCTGCATGTCCACCAAGTAGGTGGTCACCGTGAACAGAGTGGAGGCGCAGCACAGGGAAGACCAGATCAGGATCCAGACCCGGGCGAACCTGATCTCGCTTTCACTGAAGAACATGTATCCGAAGCTTTTTGAAGGCTCGCAGGGCGCCGCACAGTCAGACTCACCCAGgaatttgtaattcaagtagGAAGGCACCTGGAGCACTTTGGGGCATCGGAAAGGCCTGTCCGGGGAGGCATACACGTGAATCCCTTGGGTCCCCGCAGCTGGTACTCGCACCGGCGGGGTGGTGACTGCATGCACCCCGGTCTCCGAGTCGTTCTGGCCCACGCAGATCGGCCCACCGCCGTGCACCGGGAAGTTCTCGCAGCGCAGCCTCTCCGGCCACTGAAAGCCGAATTTGTTCATGAGAGCCTCGCAGCCCTGCTTGGCCCGCTCGCAGATGGACCGACACGGGGGGATGGCTTTCTCCAGCACAGTGCACACCGGGGCATACATGGAGCAGAGGAAGAACTTGAGCTCTGGAGAACACTGCACTTTCACCAGCGGGTAAAACTGATGCACCTCCAAGCCCGCGTCCTCCTGGTTGTAGTGCCCTACTAGATTGGGCATGATGGTCTGGTTGTAGGCAATGTCCGTGCATAGTGGGATGGAGATGGGCTGGCAGAAACCGTGATCCGGGACTGCGATGCCGCTGTCCCCCTGATGCTGCGCCGAGACCCGCAGACAGGAGGGGAGCAGCAGCGCGATCAAAGCGAGAGTCCCCTGTGCGCCCATATCGGCTGCAACTTCTGCGTCTCTCCTCGTCTTccagaagaaaataagaaattcaACTACGGTCCACTTTTAGGTATTCCTTGATTGGTTTTATATATCGTGGCATGAAGAACAGTAATCAGGaatcagttacagctgtaaaaGTACTCCCCGTTCAACTGTTGCCTTCTTGCAGGAGACTGCATGACTTTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU20285 lncRNA downstream 191612 32984254 ~ 32984464 (-) True G16325
TU20247 lncRNA downstream 314479 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 318611 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 739393 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 747996 32427852 ~ 32428080 (-) True G16249
TU20354 lncRNA upstream 76770 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 105131 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 113148 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 146203 33325086 ~ 33328341 (-) True G16422
TU20499 lncRNA upstream 449217 33628100 ~ 33628919 (-) True G16502
AMCG00016877 mRNA downstream 4143 33168630 ~ 33171933 (-) True AMCG00016877
AMCG00016878 mRNA downstream 15117 33155283 ~ 33160959 (-) True AMCG00016878
AMCG00016876 mRNA downstream 27647 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016869 mRNA downstream 241570 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016870 mRNA downstream 245263 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016879 mRNA upstream 12819 33191702 ~ 33195256 (-) True AMCG00016879
AMCG00016884 mRNA upstream 128858 33307741 ~ 33318582 (-) True AMCG00016884
AMCG00016888 mRNA upstream 154579 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016887 mRNA upstream 203001 33381884 ~ 33390755 (-) True AMCG00016887
AMCG00016889 mRNA upstream 212906 33391789 ~ 33434651 (-) True AMCG00016889
TU20188 other downstream 672824 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 677181 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 752638 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2646576 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2973725 30201459 ~ 30202351 (-) True G15706
TU20415 other upstream 247605 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 309842 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 927807 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4579274 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4848600 38027483 ~ 38058939 (-) False AMCG00016959

Expression Profile


TU20326 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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TU20326 Expression in each Bioproject

Bar chart with 7 bars.
TU20326 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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