RNA id: TU20374


Basic Information

Item Value
RNA id TU20374
length 3249
lncRNA type intronic
GC content 0.42
exon number 1
gene id G16395
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33325094 ~ 33328342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAGAGACTTTGACGTCAGATGGTGGAATAAAGGGACAGAATCCCTCCTCTGCTTTACACAGTTACTCATAACGTGGCAACGAATGAAAACGCACGTTATGTCACATCGTAGGGCTTTAGGCCACTAGAATTGTTTATTTGCAACTGGGATAGCAGCTGTAACGCATGAAGGCAGTCTGGGCTGTTTCAAATGACGGGTGTGTTAACTACAACATTTGTACACCTTTGGGACTGTTATGCTCAACTATGACGAAATGTAGGTCTGAACACAGGCGCGCAGACTGCTTTTCTCATGTATCCACCGCTGCGTTGCAACTCTCCCAGTCTGTGCCACTGTCATCCTTCCTCAAGTATGGCATCTTAACAGGTttagtttgttgtgtttttgtctgcatGAATTAAATGGGTCAGATGGTTTGACAGGCTGCCCGTACCTTTTCTCAAAGTGTTCagccaggggtggggggggggttctgtcCTTTGAGACTCCTGTGTAAGTTCTCTGGTCAACTAAAGCTGAAGGACAGTACACTTCAATAGCTGCACTGGTGTCTGTCACCAGCTGGAGCCAAATCTGATACATTGTGGATCAAACTGATGGTCACAGCTGCTCTACAGTTCAAGGTCCGATTTGCCACATGTCGTTGGTATAGCCTGCCAGCACTCCAGTGACGAACTTCCTTTTCTCTCATGAGTCCACTTGGCCCAGTCCGTGCAGATCACTCGGTTAAGTGGATTTGTATTGAAGGTTTCAGAGGCCGAGACTGTACTGCTGGTGTACACTTAAGAGCAAGGTCCATTTAAAAGCAGTGAAAATCCGTTTTGTGGGTTTTTGGTTGCGCCCACAGATTGTTTTTACACAGTAAGTCATCCACAACCaatttcaacaaacaaaaagatgacATGCTTGCAATAAGAGGAGTGACCCTGGTTAGGAAATCTGTGTGGCTTTCTGATTTGACAAGATAATGAAGGAATGCAACTGTAGTGTTGTCTATCGGAGACGATGACAAAAGGACACCCTCGGAGGGGGTGGCTTTTTAAGTGTTGATCCTTACAGTGGTAATGAATCCCAGACAACAGATTGGTTCTTGCTGAAGTCCtaggtattttaattaaatccaagGGTGCCTCTTCAGATTCCTTTTGTATCTTAATGACTCTGTGCAGGAAGCTGTTGGTGCAGTACACTAGCAGAGCAGATTCATGTGTTGCTGTGCTATACAACTCTTCAGAGGCCTGGATTGAATAGAAacctctttttattattttttcccttatcTAGGGTTCTTCATTTTCAGCTGTCATTGTTCTTCTGCCTCCTGTGTTTCTGCATCTGCTTATTGGTCTGTAATTGAAGTGGGAGCATTTCAGTTGTGCACTGAAGATTTTAAATCATGTCCTGtaggagttttttttgttgcaaaTCCCTAGTTAACATAATAGAAAACTCACATGACACAACTGTACTTGGAAAGTTGGAACTGAACACAGGGCCTATATGGGAGTGgctgttaaaatataattcaggTTTGGAAGTAGCTTATACAGgagaagaaaatatgttttaaattatgaaaagtaATGACAATTAACTACGACAGTGgaagatattttcttttctatatAAGGTTGTTTAACTTAGTACGTGATTGTGTTGGTCGTATGCAGTTATTGGTGAAACAGGAGAGTAATCGGTTGTTGTCTGGGTCACTGGGGCAGTGGAGTGGGATCAGAGGGTGCTAGGCtaatgtgcacacacacacacacacacacacacacacacacacctctgccCACTAGTTCCATGTATGACTCAAAAATCCAAGTCTCTCCTCTTTTATGTGAATTTTACCTTTTAGCCTGGACTGAGTCCCTCAACACCAGAAACTTAGACACGGCATAACTTCATCTCGGTAGTGCTGGGAATCCCCTTTGTATTTAATGAAGCCTGCCACAATAACCagagaggggtggggtgggggggtctgggCATTTCCACAGTCCAGAAGGAAACTGATCCCGTCTCAGAGCCTTGCCTGTGCTATGCCCGTGAGACTCTTCTTTTCTATGTGTCTTTACTTCTCCCATTTCTTGTGCTCAATATGAAAGGTTACCCTTTTTAGCATGTTTgtagtggaaaaaatatataatgcatcttATATCCTACTTAAGATCTTGATAGCAATATTCAGCCAGtcattttcttcctgttttcaatttgatttgtttttccatataACCCTTTGTCATGTATAGACTTAACTCTTATATTGTGTCTAGAAAAGCGCCTAAAATCCATTTTTTGCAGCTCTGAGTGCCAGCCGCTAGTGACGGAAGATGCCCCGCCAGACCTGTCACTTGCCAGGCTGAAACTTAAGGGGTGACCcttgcaaaaaaacacacacatatataatgtgtgtgtgtgtgtattatatatatgtatgtatgtatgtatattgagagagagaagtgcTGATGAGAGATGTGGTTAAGCTGTTTTGATTTCACAGAGCTGTCCAAATAAAATGACCATTCATTTCGGTAAGCTCCCAAAGCAACCCTATACCACACTACTTCTTTGATAGGAGTAGTACAAACACAACCAGTCCATTCTGGAATGTATAATTCTGCAATCAGTGGACCTGTAAGTGGAATACTGTAGGATTTCAAGTTGAAATGGCTTACTGGCAAATAAACCCTTGATCAGTGGCATTTATCTCCTGACTCTTATGCTAAGCCAAACTGCCATATCTGTGCAAAAGATGACAAGCAACTGCAAATTCCAAATCCACTCCCCATTTGTATTGCAGATTTCGGCTATATTAACTGGAGTCCCATTACTCACACCAGGGCTAGAATTAATGAGCAAACTATTTGGCAGGGAGGAACGTAGAAGTACCTCATTAAAGTGAGCGAGCGAGACAGGATTGACTCTGGAGTGTATCTCAGATTTTCAGTGACCTCGTCAACCTTCAGGAGCAAGAGACTGTGCCTTTGGCCTTGATTGTGATGCTGAATTTTGGGCAGCTAACAGCCCCCCAAGTCTTCCCTGGGATCTGTTGTGTACAAACGGCACTCCATCTGTCTCTCATCCTCTCTCCTGCCTGCAGCGCATCCCTCATTTCTTTGTAAAAtctgtgagtttttttttctctctgaagcAGTGTGCTTTAATAAATTGTGATAGCTGTTTATTtacaatgaataatacaaaataaaaaaaaacattttcttacaaaATGCC

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20321 lncRNA upstream 144655 33180239 ~ 33180439 (+) True G16351
TU20320 lncRNA upstream 145154 33179705 ~ 33179940 (+) True G16350
TU20283 lncRNA upstream 342764 32981779 ~ 32982330 (+) True G16323
TU20241 lncRNA upstream 466078 32857551 ~ 32859016 (+) True G16290
TU20144 lncRNA upstream 882509 32438254 ~ 32442585 (+) True G16211
TU20376 lncRNA downstream 455 33328797 ~ 33333746 (+) True AMCG00016880
TU20498 lncRNA downstream 318146 33646488 ~ 33648455 (+) False AMCG00016898
TU20509 lncRNA downstream 322739 33651081 ~ 33651289 (+) True G16512
TU20546 lncRNA downstream 664840 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 764934 34093276 ~ 34099596 (+) True AMCG00016909
AMCG00016882 mRNA upstream 23181 33293053 ~ 33301913 (+) True AMCG00016882
AMCG00016883 mRNA upstream 32503 33256225 ~ 33292591 (+) True AMCG00016883
AMCG00016881 mRNA upstream 80611 33221534 ~ 33244483 (+) True AMCG00016881
AMCG00016886 mRNA upstream 103810 33207472 ~ 33221284 (+) True AMCG00016886
AMCG00016885 mRNA upstream 147162 33176271 ~ 33177932 (+) True AMCG00016885
AMCG00016890 mRNA downstream 195546 33523888 ~ 33548644 (+) True AMCG00016890
AMCG00016900 mRNA downstream 241070 33569412 ~ 33580105 (+) True AMCG00016900
AMCG00016903 mRNA downstream 251967 33580309 ~ 33597112 (+) True AMCG00016903
AMCG00016899 mRNA downstream 268820 33597162 ~ 33617484 (+) True AMCG00016899
AMCG00016896 mRNA downstream 290950 33619292 ~ 33624535 (+) True AMCG00016896
TU20240 other upstream 467654 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 821838 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 821838 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 821838 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1590778 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 340287 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 719029 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 771973 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5167709 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 9062955 42391297 ~ 42397787 (+) True G17697

Expression Profile