RNA id: TU20499


Basic Information

Item Value
RNA id TU20499
length 820
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G16502
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33628100 ~ 33628919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCCCAAACTGTGCCCACCGTCCACTCACTCTCCGGTGGCGTCGGCGtagcgcagatgtgcgcagctccaccaataggatcgctgggattctgcagatctgtgcaaatcTGCGCCCCACCAACGCGACCTCTGTCCCCAGTGAGTGGCCTGCTGTGCGATAGCGGCATATTTACCTGGTTTCCCGTCCCTGTGCCCGGGCTGCTGCGGTTTGTTGTGGAGCTGGAAGGGAACCGTAGCCCTCAGAGGCTGTAATCCCGAACTGCCGCCCCGGACGACCCCCACACCGCTTCGGCACGACATAGCGAGTAGCCACCGCTGCGCAGGAGCAGACTGGAAAACCACCTTGGATAACTTAAAGCCGAGTAATAtggctgtttaaataaaaattataatgatgatgatgataataataataaaaagtaacttAAAAGCTTAGAAGGCTTTAACAAGGCCAACACAGCAGAGTTATAACTCTAATTGATCTCTACATCTATATATAGTTGGAGTGAATCTGCACCGCGGTGGTAAAACAGCTGCgtttcccacacacacacacaaagtattttcttttgtgaagATAACGATCTTTTCGAAGTGGATTCCCGGCCCGGTTCTCAGTTTTCAAACTCAAAACACGTCGGCCACTGTACACCCAGCTCGGCCACTTTCCCAGAAGAAGTAGGAGTCGACTGAAGCGCTCGCCATTATGTGGGAGCGCTCGGCTCGGTTCCGCTCGCCTCCTGTTGATGCCCGACCTTCTTCTTGACAAACTGACAACAGCGACATGCTCCTGTTCCCGTTTAATTGTAGTGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20405 lncRNA downstream 299759 33325086 ~ 33328341 (-) True G16422
TU20357 lncRNA downstream 335851 33292031 ~ 33292249 (-) True G16378
TU20356 lncRNA downstream 343873 33284014 ~ 33284227 (-) True G16377
TU20354 lncRNA downstream 371718 33255653 ~ 33256382 (-) True G16375
TU20285 lncRNA downstream 643636 32984254 ~ 32984464 (-) True G16325
TU20502 lncRNA upstream 5208 33634127 ~ 33634339 (-) True G16505
TU20506 lncRNA upstream 12279 33641198 ~ 33641979 (-) True G16509
TU20507 lncRNA upstream 14059 33642978 ~ 33643661 (-) True G16510
TU20508 lncRNA upstream 15290 33644209 ~ 33648440 (-) True G16511
TU20516 lncRNA upstream 30714 33659633 ~ 33662283 (-) True G16519
AMCG00016904 mRNA downstream 31858 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 52804 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 108026 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016891 mRNA downstream 121762 33489013 ~ 33506338 (-) True AMCG00016891
AMCG00016894 mRNA downstream 148645 33474010 ~ 33479455 (-) True AMCG00016894
AMCG00016907 mRNA upstream 248184 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016908 mRNA upstream 371678 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016911 mRNA upstream 585980 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 1462534 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1606673 35235592 ~ 35245651 (-) True AMCG00016936
TU20442 other downstream 114521 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 197015 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 449217 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1124848 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 1129205 32497507 ~ 32498895 (-) False AMCG00016859
TU20574 other upstream 477771 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4129238 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4398564 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4425746 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7587732 41216651 ~ 41217231 (-) True G17421

Expression Profile