RNA id: TU20516


Basic Information

Item Value
RNA id TU20516
length 2631
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G16519
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33659633 ~ 33662283 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGGTGTAGGCCTATGTGTgccactaaataaatacataaataaaagaaagttaCAACTGgaagtgacacacacacaaacacatttgtccACAATGTCATTTAATTTGGCTTCACCCCACACAGGTTGGGCCCACGTTAGTACATGATGCTGGTAACATCTCATACACTTGGCAGACGACAAGATCGCCATTTAAGGCCGAACACGCACAAGAACACGAAACACCTTCCTTTTGTGTAAAATATAGATTTCCCTTTTTTGCGttctctcttttaaaaaaaaataatttaactaaGAGTAGTTATGGaaaccagaaagaaaaatacagtcaaacaaaataaaacaatttaaacatgcaataaaactccagagataaaataatattgtgatgTAAACTACATTGTTTGTATAGTTTGCCATAATTCAGTTATATTAACCTGCAGAATAGTATtcagacaattaaattaattaaacaaataaccataaagaaaacataatttgtattatagcAGATGCTTTGATCCAAAGCGACTTGGAAAGACTGAGGTGGTAAATGACTGGtaaaactgctgctgctggagagTCACTTATGACACCCAGGAATGAGTGAAGTACCCAGCCCAGAGGATCCACGGTGCGTCAAGGCTAATGCTGTGAATAGGGGGACACTGACCTCCTGAACTCTGAGATGTGTGTGCAGGAGAGTTTCAGAATCTTATCATAACCACCCcacacaatacaatttaaataaaaagttgaaaacaAAGATGTCATTACTTTGCTGGTACTGGTTTCTGTTCAGAATTGGAATGATTTACAGGTTTGAGATTAAACAGAGCAGAAACCTTGCTGAAATACACCGGTAGAGCTCTTATCATcatttaattgcagaaacaaggaTAAACATTAAATCTGACATACAGTTGTATAAACTACTTGAAACTGTACAACTTTGAGATGGACacattggggtggggggtttcaATCATCCCAAATGACCACCTCTCACactgtatttttcaaaaggaATCTGCATATGGATAAGAAAACCCAAAAACATGGATAAAGATGTATGCAATATGTTTTATAGGGGTGGAGTGATAAAGAtctttaaaatttgtattttccattgtCTGCATTTTTCTTGATTTCATTGTTCACTGATGTTTGGTCTCTTCCTCTAGTTGCTGCTAGGAGTTTCCGAAGTGGTTTCACACTTTACTGGCATTGACAGTGAACTATTCCAAAAGAAACTTGGGAAGCTGGGAAACAATAGATTTAGCTCTGAAAGTCAGGTGGGAAAACCCACATTTAAAACTGGCAAATTTGCTTACAGATAAAGAAAGATAGCCATTCCAAGTTGTGAAATGTGtggaatttttttaaataataaagcagaCAACTCTGTGCTGCTGTCAACTCTGGACAGAGAGcagtgttggggtgggggggtgtccGAAGGAGAGCGAGGTCCAGGTCTGGACTTGACTTGACTTCTTCAAGTTAGAGTGAGCGCCACTCCACAGAGGAGGGTGGCAGCAGCAGTCACAGTGGGGGCACAGAACACTGACCCTTGGGTGGGGGGCACTGCAGCAGCTTCTGGGCTTCCTTTCACCTAAGCTCTTAAATCACTTATTTCCTTAAAACGGGTCAATTTCTCCTCTGATTGCAGACACTAGGTCTGGGTTTATACCTGGCAACATCACTGCTAGCTTTACATGCAATTTTCTACCTACTTACAACATTCCTCAGTTCAATCCAATTAAAGTGATTGAAAACAAGGATGAGCAATTTGgatttcaaattattcaaactGAAAACCCACTTTAAGTGACGTTtacaatatacatgtaattataatatacatttatattcaggTCTTGCTTATTGTGAGGCACAAGCCCAATTCCCTACTGGgtgccaagcatgcacacagcCCCCAGCCCctgatcatttagagatgttGATGAAAGCAGTCAGGATTGtgcccTGTTCTCCTCCAGCCCACTGACAAAGCCCTGCTGTTTTTCCAGTTCCTCCTAATGAGTCGTCTTCTTGGGCCCTTTTCCAAACTTGGCGTCCATTCCCAGACCTAGAGAGGAATAGAAGAGcatcaaataaaatcactcGATAgacaataaaacagcacaaaaaataTAGGAAGATATAATTGGCTGCTCAATCAAAACCAAACGCGAGGATAAAGCAGCAATTGACATTATCTCTTTGTAACACAAAcccttataaaaataaatcacttcaaatattcaaatcattgcatttaaattggcTTCCTAAAAGGATCACACCACACATCAACAACCACAGCACAGCTTCAGCGCTTCATTCATTTCTCTTATTGTTCACATCCTGTTGAGTTTTAGGAAGTATTGCAGCCCCTCACAACAGGTTCCCTCAAGAGTTGAACTGATGGTGGCCTCCACAGGACCAGGACAGAGCACCGAGAGATTCAATCGCACACTCACCCAGGAAGACCAGAATGGTGCCCACCCACTGCATGGAGCTGATGGCATTGCCAAAGATGAGCACAGAGCCCAGGATGGTGAAGAACTTGCGTGTGGTGGTGATGATGGAACAGGTGAGCGGTCCGAAATACACCACGGTCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20508 lncRNA downstream 11193 33644209 ~ 33648440 (-) True G16511
TU20507 lncRNA downstream 15972 33642978 ~ 33643661 (-) True G16510
TU20506 lncRNA downstream 17654 33641198 ~ 33641979 (-) True G16509
TU20502 lncRNA downstream 25294 33634127 ~ 33634339 (-) True G16505
TU20499 lncRNA downstream 30714 33628100 ~ 33628919 (-) True G16502
TU20523 lncRNA upstream 6313 33668596 ~ 33673557 (-) True G16522
TU20537 lncRNA upstream 109425 33771708 ~ 33806422 (-) True G16533
TU20562 lncRNA upstream 330907 33993190 ~ 33995260 (-) True G16554
TU20564 lncRNA upstream 434029 34096312 ~ 34100223 (-) True G16556
TU20568 lncRNA upstream 438638 34100921 ~ 34101206 (-) True G16560
AMCG00016904 mRNA downstream 63391 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 84337 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 139559 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016891 mRNA downstream 153295 33489013 ~ 33506338 (-) True AMCG00016891
AMCG00016894 mRNA downstream 180178 33474010 ~ 33479455 (-) True AMCG00016894
AMCG00016907 mRNA upstream 214820 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016908 mRNA upstream 338314 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016911 mRNA upstream 552616 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 1429170 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1573309 35235592 ~ 35245651 (-) True AMCG00016936
TU20442 other downstream 146054 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 228548 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 480750 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1156381 32497507 ~ 32503252 (-) True AMCG00016859
TU20574 other upstream 444407 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4095874 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4365200 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4392382 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7554368 41216651 ~ 41217231 (-) True G17421

Expression Profile