RNA id: TU20523


Basic Information

Item Value
RNA id TU20523
length 1339
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G16522
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33668596 ~ 33673557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGACACCGATTAATTACAGAAACCCAGTAACAGAAGGCCACGGTTTATTTTGCGGCTTCAGAAATTATGTCGAACACAGCAAATTTGCTAAAACACATTATACCAAGTTTAGAGCATGGTCCTATTATGAGAGACAAGTGCAAAAGCATAACTTCAGAGACAACTGATGGGAATTTGAATTACAATCATGAAACCATCCCTCTCAACAACACTATTAAAACTGGCAATTTAAGAATAAGGGATTActgatggaaatgtatttgaacaatGCAGGCAGTTAACCAAATGGTTGTCAAGTATCAAGCTGCTGAAACTACACACAGCAGTTtaatgaaaatggcatttaGCCAAGGTAAAATGTTGAAATCccatattttaatcaaatggcAAGAACATGCAAATAGAGCACTCGCTGCTTTTCGATATCTGTAGAGGTTTTATGCCTCTTTAAGcttgaaaatattttgcttaaaaaaaaaaaaaagtagcaaGAGCAGATGGTTTGGACATGATGGGAAAGGGGGTAAGGTAATTTGTCTGCCATTTAATGTCAGCAAATGCACAGCAAATCACTCAAGTTGAGCGGTGTCCAACAGAGTCAAATTAAAAAGCTCAGCAACCTCTGCTGCTTAGCTGAGTATAGAGGACCGTAGGCGGAGAGAAAGCCCGATACACATGAGGCACAAGCTGTGAGGTGAAATCTGGGCAAGACAAGATAAAAGTCTTGGGAAGAGGGCATCACCATTTACCACCTTTGCACATTTGACACCAGCAAGAGCCCCCTTTCGCAAGTGAAAACTTATGCtttgaatataattataaatggaTCTCGCTTAGTCTGCTTGAGATAGAACTGGTGACAAAATAGTAATGGGATTTTAATGCTGCCATTATTGTGGTTGAAGGGTCCACACTCATACACAAATGAACAAAGACTTTTCACATTTAACCAGTAGGTGGTAgctgctttatttgtttaatgcagACAAACCATAAATAATGACAGAATGAAGATTAAAAGTTCTGTGTGGAACTCAGAGACTGACAGATCCATCCTTGCTGGGGGACAAAAGGGACAAAAGGGACAAAAGTTGAACATAGATGGACTCTTTGTGCGGTTTGCTTCTTACTTACGCTGGGGTGCTTTTTGGCGTGCACAAAGATCGTGCGGAACATTTTGAAGAGacttttgattttctttctcccAAAAAGTGCGAAAGGAAGTGTAAAACCCAAAGGCCTCTCCTCTCAAAGACACTGCTCTCCTCGATACTTCTGCTCTGAAAGACTGTACTTTCGGACCCCACCTTATAGATAGTAGGAGTCTACTGTGCCTG

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20516 lncRNA downstream 6313 33659633 ~ 33662283 (-) True G16519
TU20508 lncRNA downstream 20156 33644209 ~ 33648440 (-) True G16511
TU20507 lncRNA downstream 24935 33642978 ~ 33643661 (-) True G16510
TU20506 lncRNA downstream 26617 33641198 ~ 33641979 (-) True G16509
TU20502 lncRNA downstream 34257 33634127 ~ 33634339 (-) True G16505
TU20537 lncRNA upstream 98151 33771708 ~ 33806422 (-) True G16533
TU20562 lncRNA upstream 319633 33993190 ~ 33995260 (-) True G16554
TU20564 lncRNA upstream 422755 34096312 ~ 34100223 (-) True G16556
TU20568 lncRNA upstream 427364 34100921 ~ 34101206 (-) True G16560
TU20569 lncRNA upstream 427730 34101287 ~ 34101572 (-) True G16561
AMCG00016904 mRNA downstream 72354 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 93300 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 148522 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016891 mRNA downstream 162258 33489013 ~ 33506338 (-) True AMCG00016891
AMCG00016894 mRNA downstream 189141 33474010 ~ 33479455 (-) True AMCG00016894
AMCG00016907 mRNA upstream 203546 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016908 mRNA upstream 327040 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016911 mRNA upstream 541342 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 1417896 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1562035 35235592 ~ 35245651 (-) True AMCG00016936
TU20442 other downstream 155017 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 237511 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 489713 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1165344 32497507 ~ 32503252 (-) True AMCG00016859
TU20574 other upstream 433133 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4084600 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4353926 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4381108 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7543094 41216651 ~ 41217231 (-) True G17421

Expression Profile