RNA id: TU20555



Basic Information


Item Value
RNA id TU20555
length 549
RNA type TUCP
GC content 0.61
exon number 1
gene id G16550
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34100315 ~ 34100863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCAGCTGAGGTGCGCAGTTACAGCGCGGCCACACGGAGGCGCCCTGAACAGGGCCAGTGGAGACGGGTATGAGTGACGTCAGTACAGAGCCCCTGCGGGGTCAGCGCCGTGGCCACTGGGGCGGTGAGGAAGTGACGGGACTCCGGCGAGGTGTCGACCGGGATGACGAAGTGACACCCCGTGTGGAGACGCTGCTCCAGGGGCGACGGACTCGGGGGCGGGGCAGTCCTGATGGGGCGACTGAGGCGGCCGCCTCTCCCGGGCTACTATTGATCCGAGCCATTGCACACCGGATTGAGACAAACTGCTAATCGGGTGTGATGTCATGTGACTCGGGTCGCTGTGTTTTCAGCTCGATGATGACACGTGTCCGGCTGCCGAGTCAACTGCCACTGTGACGTCATAGGCAGCCGGTTCACTAGAGCAGCTCACAGGACGTGTCACAACTCGACGGAAGTGTTGGTGGAAGGTGAGAGTACCGCTCCCGCACAGAAGTAATACGGCACCAAAGACTTTGCAATGGAGAAGATACGCAGTTTCCTGAAGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20553 lncRNA upstream 719 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA upstream 1923 34093276 ~ 34098392 (+) False AMCG00016909
TU20546 lncRNA upstream 104933 33993182 ~ 33995382 (+) True G16542
TU20509 lncRNA upstream 449026 33651081 ~ 33651289 (+) True G16512
TU20498 lncRNA upstream 451860 33646488 ~ 33648455 (+) False AMCG00016898
TU20560 lncRNA downstream 3593 34104456 ~ 34105687 (+) True G16552
TU20676 lncRNA downstream 496959 34597822 ~ 34599917 (+) True G16646
TU20699 lncRNA downstream 635474 34736337 ~ 34736549 (+) True G16668
TU20725 lncRNA downstream 674962 34775825 ~ 34777047 (+) True G16692
TU20731 lncRNA downstream 720334 34821197 ~ 34821413 (+) True G16698
AMCG00016909 mRNA upstream 735 34093302 ~ 34099580 (+) False AMCG00016909
AMCG00016905 mRNA upstream 298505 33791287 ~ 33801810 (+) True AMCG00016905
AMCG00016906 mRNA upstream 326782 33761418 ~ 33773533 (+) True AMCG00016906
AMCG00016901 mRNA upstream 425954 33668593 ~ 33674361 (+) False AMCG00016901
AMCG00016897 mRNA upstream 438008 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016910 mRNA downstream 68625 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016913 mRNA downstream 168135 34268998 ~ 34271418 (+) True AMCG00016913
AMCG00016914 mRNA downstream 193350 34294213 ~ 34296833 (+) True AMCG00016914
AMCG00016912 mRNA downstream 210005 34310868 ~ 34340346 (+) True AMCG00016912
AMCG00016916 mRNA downstream 259364 34360227 ~ 34435938 (+) True AMCG00016916
TU20550 other upstream 52595 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 427695 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 1242875 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1597059 32499056 ~ 32503256 (+) True AMCG00016854
TU21320 other downstream 4395188 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8290434 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 10025351 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 10553789 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 15301856 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile