RNA id: TU20562


Basic Information

Item Value
RNA id TU20562
length 2071
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G16554
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33993190 ~ 33995260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTATCACAAGTGCCTGGGTTTGTATCAGgtctctttttttatgtttttttattttgtattattgtttttctgttaacaATTGCAGATTGTAGCCTCTGCACAGGCCTGCATTGGTGCCCTGTTAATGTGCAGTGGCCATACTGAACTAACTCCCCATTCTCAGGAGCCAATCATGAACACAGACACCACCATGCCCCAGCACCTGACAGAGCTTCTGCGTTTCACTGACTGACTAGCATATTCCTGATTGGACCTGATCATTGTTGTCAAACAGCTCATTGGATGATCTAgttatgtttttcagttgtgtACTTTACCATGGCGGAATTCAtctcaaagtaaaacaaaaaagtatctATCTTCATATGCTTAAACAGCCAAAGTTGCAATTGGTAGAACTCTGCAGGAAAGCCTTGAATAAGTTCTGTCTTCAGTTTTAATGAAATTCTGGAACTTTTGTTAATTCCTAATGTGCTTTCTTTTGTATAAAACTGTGCTAAGATTTTTTCCTATGGGAATCTTGTGGGTCGTGAATTGAGATCTTACAGTGATTTTTAGATTGAAAACCACATTagagaaatggaaatggtttaTGTTGTCCCAATACAGGTATTTCAATTGTGGCTTTGCTGTGGTTTAATGCCATTCAGTGAATCTTGAAAACATTCCAGATCTTCTTTTTCACAAGGACTTCTTAAGGACACATACAGCAAGAGCATAATTTCTGGCCAGACTACCATGTTACTATGAAAAGCTTTGGTGACAAAACTCATTCATCTTAAGATGACAAAGACAGGACCAAAATAATTCAATCCAAAAGAATGGAGTGTGTCTTTAAGTTCCAGAATGCCACACAGGTTTGTCTTGTAGACCAACTAGAATCCCTTAAGAATCAATACAGTCGAGTCGAATTTAGTTgagcttttcttattttgtataaaaagtaGCCTGTAGACTTACTGTGCTTCCCATACTCAATTTCTACCCCTCAGGGTTTGTAAAGGTCTTCAGTGCATCAGTTCCAGTTGACAGTTGTTGATCTGCTGTTTTGCTTTGCATATTCTGCAATGCTCTGACTAATGACTGAACTGATTTCTCCCCAGATTTAGTCCTTTcaccaaaacattaaatgtacagGCACTCCCTGGGTTACATAACACGTGACTTATGTAAATTTGACTTGCCCATAGGCCCCATTTGAAATTTGCAGAGTTATGAAACTTACATCAGATACATAAAGAGCAAATAGTGCAATAAGTGAGTTACCAATTTATGGAGAGATTTGCAGAACGGAAGGTATTGTCAAATTGTTACCGATtctactctttttttttttttttaagatatttagATGgtgattagtttttttttttttttcttgtggaaGGGTCAGGGTTCTCCACTGATGAATGTGATGTTGGAGTCCAATAGCCTTTTCTTGAATTGCAGTCACAGGGGTGCCATTAGCTTTATTTGTAACACACAAGGTGAATCAAAACAGGGGTCTGTGTTTCATTGGGCGGTGAGGCCAGAAGATGACAGTTCCTTTGGTATGAGAAGGCCAGTATGAGATTTTCAGTAGATCATCCCATCACATCTCGAAACAGTCAAACTACTGACACTACTACACTTAAGAGGTACTGAAGTCAGAATGTATTAGGAGATTTATATGCCTACTGATACTGATATTTTAAGAGGGTTAGGAGTTTAGGATTTTCACTGATCTTCAGTATTGTTGCCGGACATGTTTAAGTGTCAGGGAGTGCCATCGGATTCATGACATATGGTCTTATGCTCGGTGCCTGGAGATGTGTAGGGAAGTATTGTGTCCTGCAGAGAAGTGAAGACACCTCGCTGCTAGATGCAGAACGCCTGGAGGAGCTTACAGAGGTGCTGGGGCTGGAGAGCTGGATTCTGAATCAGGGTTCCTGGAAGAAGTGTTGTTCAAAGCTGAATGTTCTCTGTACTTACTAATAATGTACactgtataatgtaaatgtgaatttattattcaaattcttaccaacaaacaataaacaataaaacattaaaaacaaacaaagcaaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20537 lncRNA downstream 186768 33771708 ~ 33806422 (-) True G16533
TU20523 lncRNA downstream 319633 33668596 ~ 33673557 (-) True G16522
TU20516 lncRNA downstream 330907 33659633 ~ 33662283 (-) True G16519
TU20508 lncRNA downstream 344750 33644209 ~ 33648440 (-) True G16511
TU20507 lncRNA downstream 349529 33642978 ~ 33643661 (-) True G16510
TU20564 lncRNA upstream 101052 34096312 ~ 34100223 (-) True G16556
TU20568 lncRNA upstream 105661 34100921 ~ 34101206 (-) True G16560
TU20569 lncRNA upstream 106027 34101287 ~ 34101572 (-) True G16561
TU20581 lncRNA upstream 196212 34191472 ~ 34194310 (-) True G16567
TU20624 lncRNA upstream 300999 34296259 ~ 34300803 (-) True G16605
AMCG00016907 mRNA downstream 112512 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 396948 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 417894 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 473116 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016891 mRNA downstream 486852 33489013 ~ 33506338 (-) True AMCG00016891
AMCG00016908 mRNA upstream 5337 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016911 mRNA upstream 219639 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 1096193 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1240332 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 1278663 35273923 ~ 35312713 (-) True AMCG00016937
TU20442 other downstream 479611 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 562105 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 814307 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1489938 32497507 ~ 32503252 (-) True AMCG00016859
TU20574 other upstream 111430 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 3762897 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4032223 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4059405 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7221391 41216651 ~ 41217231 (-) True G17421

Expression Profile