RNA id: TU20676



Basic Information


Item Value
RNA id TU20676
length 2096
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G16646
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34597822 ~ 34599917 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGAGGACACATGAACGCCACTCTGTAACACACCCACTAGCACACCTACAAAGCACGGCTATGGCTTTGGGGTGAAGAAATGAAATGGTGGTTGTGCAGCATGGACTTTCACAGTCGTGTGTGGGACCGTGAGGAAGGATCTTGGACGACACCATGCTCACTTTTCCACAGAAACAATTAGCCTTTTCTACACCATGTGGTGACCACTGCGTTACATGCAGATCTAAGCCTTACCTACACAGTCAATTGGCAATATATATAGTGCCCCCCAACCCCAGACCACTATGACTTGGCCATTGCCTTTATCTCGACTTGGCTTTGTTacctgtatttcagtcctccaGCACCGAGAGGCCGATCTAACCTCCTCTTAAAGCCACTTATTGAGCAGTCATTAATAATCATCCCATTGCGGTACTTCAgtcatctcaattagtcattttATTACTGCAATTATGCTCAATCGCACAAATGGAGCACTGTGCTCCGCTACTGACACTTATTAAATCATGCGTCTGTTTTATGCAAAAGTATTACAGACAATGAGTCAAATTAAAATCTTCACATAATGTGTcaacagaatgttttttttgtaagagatgaaaaaatactgaaatcagaaAATCTATGCAGTAGAATATTTAAACGGGACAGTTTATAAATACCATGTAACCTGGTCTTCTTAAATGGATTAAATGTGCTGTGTGAAAGCTTGCTCTTATGAAGAAACCATATACAGAATTGTTAAAAACAATTGCACACGAGGCTAATATCCTCATTAGAAAGTTGTGAACTGgttgaacaaaaacaatttctTCTTGAATCGGTTCAGgtcatattacattttcagattttagaAAGAAGCACTCGGGTCTGCGTAGATGATTTCCCCCcaatattattactaataattatgattagtaTGATTTATTGTGTGACCTTTATTTTAGACTTACAATAAGTCACAGATAAAGGAAACAATATGTGTTCTTTTCGCCACaatgaaagtgtaaaaatgtgttaaagccACCTAGTCTGGCTCGCTTTATTTGCTATATAACCAGTATCAAAAATAAAGTACTGCTTAAATTGCTTCTGTGACCCCACAGCTGCAGGGACAGTCTcaacctttttttaaacacgTCAATTGATTGAATCAGCACAACCTACTCggcattcttttttctttttggaattAGTCAGAGCTTaatgtgttaatatctttgtaacCGTTCGTTCGACTACAGTCACTAGAGTGGATTGCCAACAGGGACACCTGCAGGAAAATTCACGAATTACAGTTCTTGAAAACAGGTCGAGATAAACGCAAACCCCTAACTATGACATCTGCATAGgtcttttaatatatacagagcCTTTTGTAACCCCGTCTCTGTGCAGGTCCTATTCATATCTTCCTTGGGTTCTTCTGTAGATTTTCAATGTGGAACCAACCATCTTTACCTGGGAGGTTAGGGTGCTAATGCTACGAGCTGGGCTGTAATAAACcaggaatttaaaataatgtataaatatatgtatataatttttgaAAATTCACTGTCTGTTACGAGCAGGGAAATAAGTTATGTAAAAGCACAGCTGTATGTTTGACTTTCAGTAGCTTCAGATAGAATCAACACTTTAACCATAGGtcaagttaaaaaacaaaaggtatgCTGATGCATCCACATTTCTGAGATTTATGTAATGccgtcacagtttgttttttttgcttacaAAAGTTGCCTTTTTTTGGTCTCATTTTTATTTCGCGGGAGCTTTACACTGGTTGTCTCTGTCACACTGTTTTCTAGAGTGCATAGTACTGTAAACGGCAAGTTGCGATTTCATTGGGAAATCCAGTTGATTGAAGTCAAAGCTCTTGTCGACTGTGAAGCAGGCTGGCTGGGAATAAGAGTGGTGATTTTTAGTgtgaagtaaacaaacaaagctaATGAACCACAACAAGCTCCTGGTATGTTCAGTTTAAGTGTAAAAACTGAAGACTCTGACAACATAAAGGATCATTTTCAACAGTTCGAATTGCTGTTGCAGTTGATTTATGATAACTTTTTTAACTTGCTGACATCATC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20560 lncRNA upstream 492135 34104456 ~ 34105687 (+) True G16552
TU20553 lncRNA upstream 498226 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA upstream 499430 34093276 ~ 34098392 (+) False AMCG00016909
TU20546 lncRNA upstream 602440 33993182 ~ 33995382 (+) True G16542
TU20509 lncRNA upstream 946533 33651081 ~ 33651289 (+) True G16512
TU20699 lncRNA downstream 136420 34736337 ~ 34736549 (+) True G16668
TU20725 lncRNA downstream 175908 34775825 ~ 34777047 (+) True G16692
TU20731 lncRNA downstream 221280 34821197 ~ 34821413 (+) True G16698
TU20745 lncRNA downstream 491542 35091459 ~ 35094092 (+) True G16705
TU20782 lncRNA downstream 584418 35184335 ~ 35234875 (+) True G16728
AMCG00016918 mRNA upstream 243 34558539 ~ 34597579 (+) True AMCG00016918
AMCG00016917 mRNA upstream 98170 34481133 ~ 34499652 (+) True AMCG00016917
AMCG00016915 mRNA upstream 125188 34444401 ~ 34472634 (+) True AMCG00016915
AMCG00016916 mRNA upstream 161884 34360227 ~ 34435938 (+) True AMCG00016916
AMCG00016912 mRNA upstream 257476 34310868 ~ 34340346 (+) True AMCG00016912
AMCG00016919 mRNA downstream 11726 34611643 ~ 34614856 (+) True AMCG00016919
AMCG00016921 mRNA downstream 57794 34657711 ~ 34660464 (+) True AMCG00016921
AMCG00016920 mRNA downstream 79595 34679512 ~ 34698405 (+) True AMCG00016920
AMCG00016924 mRNA downstream 108380 34708297 ~ 34727383 (+) True AMCG00016924
AMCG00016922 mRNA downstream 127488 34727405 ~ 34757001 (+) True AMCG00016922
TU20555 other upstream 496959 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 550102 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 925202 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 1740382 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 2094566 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 3896134 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 7791380 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 9526297 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 10054735 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 14802802 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile