RNA id: TU20712


Basic Information

Item Value
RNA id TU20712
length 2813
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G16679
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34754171 ~ 34757005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACCCTTTATTAGCATAGACAGTATACAGAGTGTCCTGAAATTTTGCAAGCAACtcagaaacatatatatatattattaaaaagaaaagctggaACAATTCACATCAAATAAAAGTCAATCCAGGTTGTTGGAGCAAAACGTGGCCCCTGGATGAGACAAACACTGTGAAAATCCAGCTGTTTCAGAGACGGAAGGAGACAGCTGTTGACACATCAAAAGTATTAGTGAATACGAATTCAGCCTGCTATTAAACACACTTTAATTCAGGTGCACGCTGCTGGAAAACAGAAGAGGATACACCATGGACCAAAAAAAAGATGTAAACTagtcattaaaaatgaaaaaacctTGAAAAGTAGCATTGTCCACAAGTTGTCTAATGTCATCTCAGCATCAGCTAGTACTGAACAGTCTTCAGATTGTTTCAATGTTTAGGATTTCGGCACAAAACAAGTGTTTGACTTCTGCGGATTAAGTTTTCCCTTTAGGGGTAAAGAACACTTcagtgtatttcattaaaatgtaaattaatgctGCATAAAATTATGATTGAAAGTCATTGAATATAGATTTGTTTACCAGCAACGATGTATTGATTTGTTGCACACAAACAGGCAGCCCTTGGTTTTGTAAATGGTTGATTAACATTTGCTGTGTCCATCGCAGTCCTCCAAACTTATAATCTAGCAGCTTTGACCTGGAGAGCATACGTACTGAACACAGCACCTAGCACGGCAAGACACCCTCACACAGCAGGATCCGTTATAGCCTGGACCTGCGCTTCAAACTGGGTGCCCTGCAGCAGGCCTATACCACAGTCGCAGGTGTGCTCAGGAAACAAACATGTTTGGAGTTTGCTTAGCTTAACATGGCATGGTTCTGTACCAAACGGCTGGTGTGCAGTCTATGACAGGTACAGGCAATGAAACAGCCTATCAGGAACAGGCTACACGTGCAACAAGAGACGTGGCATCCAGGTACACAGTAACAtccaaacatacagcaagaTTCATAGGTTGTTTTGCATCAGTGTCCCATTCACACAGTAACTTCAATCCTGTTACCACCTTTGAAAGCAGCGTCTTTTTATGTAGGCGTGTAGCCCAGCAGCTTATTTAAATTCCTGCCCCCAGTTTCTGAGGTACAAATGAAGTAGATTTACACAAATCCAATATACAATGGGGGCTGCcatgttatgtttttaacatCTGTCACTGTTGAAAGTCCTATGTTGAAATCTATCAGGATGACATTATTTGTACATAGCTTTGATAGGGTACAGGGTGCTAAACGGAAATGGCTTTAGTgagtttaaaaaagcaaagcaaatggCTTCAGTTTCTTGATATTACAGCGTCATCTTTTTCTCAAATTCTTAAATTCCCTGGGATTGTCTGCTTCCTTGATGACAATATACATTTGACAAGCGGAACCGTTGAACTAAAAAGACAggtagtataataataaaaacaaaaaataatttaactgaTTACTGAACAAAACAGTTAAATATGAATAAGTTCAAATCAAAATTATTTAGACAGCACTTTATAGCTTACTCAAGCTAGTGATTGAGGTTTGTGGCGGAAGCAAACCCAACTCTTTTTAGGAGGTGTAATAAAAAGGtggaaataaattgaatataaatCTGTTGCAAATATGACATCATATGAACAAGAAACATAGGATTATAAGAGTTGAGATCTGTTTCACAGGCCAGTACaacaatgtgtgttttgaaatgacATTACACACCATGGGGCAACTGCTTTTCATGACAAGACCAACTTCAGACTGCCCACTCCCTCTCCTATCTGGTTGCCATCTCAAGTGCTTCTTCCATCTCGAGGCTTGGCACGGAGATGGCGAAGCCcagaatatatacacaaacacatatacacaaacacacacacaagttttcAAGTGATAGTGGAAATGCTTTGACCTCCATCTCCAAACCTCTGGTCCCGTGGTGCTTTTCAGCATTAAACGGAATACAAAAAAGTCAGCATGGAATCAAGCACTGAGGACTTCAAAATAGACACAGATCAGACCTCTCTTCTCATTCAAGTAAtaggtgttgttgttttgttttttaaactgtatacatGACAAATGCCCAGTTCATCACACCACCAAACCCTGTTTAAACAAACTTCAAATCCCAAAAATCCCTTCAGAGGCTTTCCTGGATTAAGGTCCCTTTTTGAGTTATTCAGAAAAGGAATGGAGATCACGATTAACCTTGACAATAACGGCCACCTCGGCATAATCAACAGTCAAATGACACCAGTCTAGAGATCTTGAGACACGGTGTGTAGTACGTTCCAATCTGAAAGCCACCATAAACGCACAGGGTCACGGTTACCAAATTACAGCACATGATGagcatttcaagaaaaaaaacaaaaaaaaaactccatcctctttttaaaatgtgttctcttCAGAATATAAGGAACAGCCCGCGTTTCATCTTGGTAGAATAAGGACCAAGATTTTCAGCCATCTTCACCTCTCGGATACACATTTCTTTAAGTtgcgtttttagtttttttgtttaaatgtccaAACTTTTTAAACTTCGGTGCAAAGGTCTCTACAGCCCCACTTATGCACGGTACCTCACTTATCAATCAGGCCGCTCTCTTTCAACTTGAAATAGAAGAACTTCTCCAGCGTGTTGGCACACTTGCAGTACTCGCTGTCGGGCGGGTTGTACTCGCGGCAGTTCGTGATGATGCGCTGCAGGTCGGCAATGAACAGCTTCTTGGTCACGTAGTAGCGGTTCTTGAGCCGCTCGGTCATGG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20700 lncRNA downstream 17622 34736339 ~ 34736549 (-) True G16669
TU20684 lncRNA downstream 103997 34649953 ~ 34650174 (-) True G16654
TU20683 lncRNA downstream 154240 34597198 ~ 34599931 (-) True G16653
TU20680 lncRNA downstream 193103 34558579 ~ 34561068 (-) True G16650
TU20660 lncRNA downstream 280624 34472336 ~ 34473547 (-) True G16635
TU20726 lncRNA upstream 18820 34775825 ~ 34777048 (-) True G16693
TU20752 lncRNA upstream 359107 35116112 ~ 35118906 (-) True G16712
TU20819 lncRNA upstream 459098 35216103 ~ 35222538 (-) True G16761
TU20851 lncRNA upstream 513112 35270117 ~ 35270539 (-) True G16790
TU20865 lncRNA upstream 605118 35362123 ~ 35362326 (-) True G16804
AMCG00016911 mRNA downstream 491161 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 745371 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 873493 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 1157929 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 1178875 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016931 mRNA upstream 334448 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 478587 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 516918 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 638987 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 647625 35404630 ~ 35410252 (-) True AMCG00016940
TU20574 other downstream 646230 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1240592 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1323086 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 1575288 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2255276 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 3001152 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 3270478 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 3297660 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 6459646 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 8051706 42808711 ~ 42864616 (-) True G17842

Expression Profile