RNA id: TU20752


Basic Information

Item Value
RNA id TU20752
length 2338
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G16712
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35116112 ~ 35118906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCACCTTCATGATGCTAACATAGGCCATTAAAAGTACTGAGTACTTGAATATgagaattaaaggaaaacaaaaacctttcaaAATGGGAGATTCTACCAAGATTTTCAGAAGATATGGACTTTTGACAGGATTTAACATTTAAAGGCTTTATTAtccaatacaaaataactatagcataaatgtcaaatgtaaatgggagaaattaatgtatttacataaactGTACACCCTAGGACGTGTATATAAATGTACCTATCGCCCATCCTACTTTTGAAAAcctaccttttttttttttgctgtccAAAAATGTAGTTGATCACAAGTAATTCATGTTTGGGGAAAATGGTTTATTCATCTAATGTCAGATGAGCTATTTTACATATTTCCGTAAAAAAAAACCACAGGGCTTCTTTGCAGAAATTCAAGACAAATTATGCATATTCTGAGTGTTGAAAGAAAGAGGGGAAGGAAGCTTGAGAGTAAAAGATGCATCTTTAATttctataaacaaaaataatagtaacGGTTACTATGGAGAGCCCAGTATATTACTCCAGTGGTATGTTCATTAGAAAAATCGGTCATccatacatcattttaatacagtaatTTGCGTAACAatttgttgaaatatatattcaaagcTACTGTAGTTAGTAGAGGGATCAGTCCTCTATATGTATTTTGCTTAGGCCCTGCTGCAGTCGATGACACCTAAACATGTTCACCTTGGTGTCAAATGAACACTGAGGTATGGAGACAACACTGAGTGGGGTCTCTGTCACTGTCAGGAATAGGAGAGGAAACGCTGGGACCAAGGCTGCTATCGGAGTTCtagaaaatgcaaaactaaattGAAGGAATCCCTGCAGATAAACAAACTGGTCCAGATTAGACTTTGAGGTACTGCATTAACTGCAAGGAAACATTTTGCTGGAGCATTTCATTACATACATCTGCACAGACATATATAGACACTTCACAGCATGCTTTCACAGAAAGGCCAGGATTAAATTTGCAGATGAGTCAATGTACAAATGGTATGTGCTGCATAAATCTTCATCTTAATAGTAGTAGTCCAATAAAAGAATCACCTATTCTAGTGTGAAAACAGCAGCTGGGAATTTCTTAACGATCTTAAGCCATCAATATTGTCAGCACCTCTACTAAGACACCACTTCACTATACATACATGTTGACCTGTGTCAATATCCTTAACATGCACACTGCAAGAATGTTCCTAAGACGAAAGAAGTGAAACTTTCCAAAGGCCTATTCATAAAAATCAGCTAATTCAGGTTGATTGGCAATCATAGTAGAAAAACATTCTTGgacttaccaaaaaaaaaaaagtgtttgggCAGAGGCtaagtttatttacatttatgttgAAAATGACTCAATATGGTGTGCTGTTGGTATTAGTTTCCCCCCACCTCTGAATGAGCAACATGGAATCAGTCATGTTTTCATCAGCAGGATCTCTGCATGTTTCACTAAAACTATACGCAACACTTTCCCTTTTGGGTCAATAACACAGTTTTGTgaatgtacaataaatattacttaaaaaaacaaaaacaaacttcaactatcaacacagacagacactttaCATTCCAGTAAAATGCAGTGATGAGCAGATGGCAACATCAGACAGCACACAGCAAACTGAAGCCAATGGTGACTAGAACAGGATGACCACTGAACAGTTCACTGGGCCCCAGTCTCACCTGCATAATGCACAACTCTGATGATTATTCAATTATCCcagcatattaaaaataataattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtttaggtgcCTCAATTCTTCTTGGGTATGGAAAAACTAAACTTATGGATAAACCAAGTATATAATGGATCTCGGACagcttcaataaaataaaacaaatgagtaCAATCTGCCCATTCTGAGGACGCTGTATGCAATCCAAATCAATACAAACGTACTAATTATGGCGAGCAAATTCTTGAAAGAACCATTTTTCCTTTGTTAATAtctaatagtttattttgtgtgatgtttttaaaaagtgttatttgtttgtttaatcccCTCCATATCTCAAGATGACTTTTTTCTTCACATACAAGCATAAATACAGAGGTATCCAACTGAGAAACAGAAATATCTGGAACATTAAAACTAGGGAGGGAAAGCGAGTCCGCTTTAATGTCCATGAGAGAACTTTGCAAACAAATCGGAGACGTCCCATTTAACCAAACTGGAAAAAGAAATTCCCAGGTCCGGATgctagagagagacagaaagaggggGGAATACATCAATTACTTTTATCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20726 lncRNA downstream 339064 34775825 ~ 34777048 (-) True G16693
TU20712 lncRNA downstream 359107 34754171 ~ 34757005 (-) True G16679
TU20700 lncRNA downstream 379563 34736339 ~ 34736549 (-) True G16669
TU20684 lncRNA downstream 465938 34649953 ~ 34650174 (-) True G16654
TU20683 lncRNA downstream 516181 34597198 ~ 34599931 (-) True G16653
TU20819 lncRNA upstream 97197 35216103 ~ 35222538 (-) True G16761
TU20851 lncRNA upstream 151211 35270117 ~ 35270539 (-) True G16790
TU20865 lncRNA upstream 243217 35362123 ~ 35362326 (-) True G16804
TU20874 lncRNA upstream 277096 35396002 ~ 35398897 (-) False AMCG00016938
TU20925 lncRNA upstream 565797 35684703 ~ 35733304 (-) True G16858
AMCG00016931 mRNA downstream 19610 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016911 mRNA downstream 853102 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1107312 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 1235434 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 1519870 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016936 mRNA upstream 116686 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 155017 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 277086 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 285724 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 292673 35411579 ~ 35420041 (-) True AMCG00016939
TU20574 other downstream 1008171 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1602533 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1685027 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 1937229 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2617217 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2639251 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2908577 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2935759 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 6097745 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7689805 42808711 ~ 42864616 (-) True G17842

Expression Profile