RNA id: TU20819



Basic Information


Item Value
RNA id TU20819
length 273
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G16761
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35216103 ~ 35222538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACACCTGCAGTTTGCTGGGTCCTCCATTGTGAATGGACTGCAGAATCTCCTGCACTCTCTTCCTGTCCTGGATGCGCACTGTGGATTTGGCAAGTTCTGGAACTACATCAACTGCGATCTCTTTACAGGCTCTCTTTACACTCCCACTGTCGCCGTCGCTGCTAGGTCGCTTTTTATGCATCTTGACGCAACGGTGAAGAAAGTAAACGTCCGGAAGAACAAACCCTGCGCCGTCCGCACTCGCTCCGGTGCGCCGCTTAATGTGTCCGCCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20752 lncRNA downstream 97197 35116112 ~ 35118906 (-) True G16712
TU20726 lncRNA downstream 439055 34775825 ~ 34777048 (-) True G16693
TU20712 lncRNA downstream 459098 34754171 ~ 34757005 (-) True G16679
TU20700 lncRNA downstream 479554 34736339 ~ 34736549 (-) True G16669
TU20684 lncRNA downstream 565929 34649953 ~ 34650174 (-) True G16654
TU20851 lncRNA upstream 47579 35270117 ~ 35270539 (-) True G16790
TU20865 lncRNA upstream 139585 35362123 ~ 35362326 (-) True G16804
TU20874 lncRNA upstream 173464 35396002 ~ 35398897 (-) False AMCG00016938
TU20925 lncRNA upstream 462165 35684703 ~ 35733304 (-) True G16858
TU20963 lncRNA upstream 620392 35842930 ~ 35912085 (-) True G16893
AMCG00016931 mRNA downstream 119601 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016911 mRNA downstream 953093 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1207303 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 1335425 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 1619861 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016936 mRNA upstream 13054 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 51385 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 173454 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 182092 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 189041 35411579 ~ 35420041 (-) True AMCG00016939
TU20574 other downstream 1108162 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1702524 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1785018 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 2037220 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2717208 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2535619 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2804945 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2832127 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 5994113 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7586173 42808711 ~ 42864616 (-) True G17842

Expression Profile