RNA id: TU20851


Basic Information

Item Value
RNA id TU20851
length 423
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G16790
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35270117 ~ 35270539 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatagcattttttttttactgtttacaTTGGTGCATCCCATGCACAATCATTTCCTTTACATTGTTACTTGAAATGTTTCcctttctatgttttttttattttatttttatttttgttttatatacagtatatatatattttttgtaagaaaAGAAGTACTTTTATTGTGATCTGAATTCTCGGGGTGTTCCTGTGTAAAGAGACTGTCCTGGGTGAGCCCCTGTTCACGTGGCTTCAGCTGATTCTTGTGTTTCCTGACAAATATTCTGACTGATGTGGATTAAATCTTCCTTAGACAAAACAACCACGTGCATTTCACATTCGCACTTCTTGTGGATAGGTGGCGGTGCATGTCAGTAGAAGTAGCCCATTCTAGGGCCATGTTAAAACTGGACAGGCTGTGAAATCACATTActgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20819 lncRNA downstream 47579 35216103 ~ 35222538 (-) True G16761
TU20752 lncRNA downstream 151211 35116112 ~ 35118906 (-) True G16712
TU20726 lncRNA downstream 493069 34775825 ~ 34777048 (-) True G16693
TU20712 lncRNA downstream 513112 34754171 ~ 34757005 (-) True G16679
TU20700 lncRNA downstream 533568 34736339 ~ 34736549 (-) True G16669
TU20865 lncRNA upstream 91584 35362123 ~ 35362326 (-) True G16804
TU20874 lncRNA upstream 125463 35396002 ~ 35398897 (-) False AMCG00016938
TU20925 lncRNA upstream 414164 35684703 ~ 35733304 (-) True G16858
TU20963 lncRNA upstream 572391 35842930 ~ 35912085 (-) True G16893
TU21000 lncRNA upstream 1081414 36351953 ~ 36352178 (-) True G16927
AMCG00016936 mRNA downstream 24466 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016931 mRNA downstream 173615 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016911 mRNA downstream 1007107 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1261317 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 1389439 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016937 mRNA upstream 3384 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 125453 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 134091 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 141040 35411579 ~ 35420041 (-) True AMCG00016939
AMCG00016942 mRNA upstream 186658 35457197 ~ 35484896 (-) True AMCG00016942
TU20574 other downstream 1162176 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1756538 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1839032 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 2091234 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2771222 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2487618 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2756944 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2784126 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 5946112 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7538172 42808711 ~ 42864616 (-) True G17842

Expression Profile