RNA id: TU21071


Basic Information

Item Value
RNA id TU21071
length 401
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G16990
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37247428 ~ 37303443 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtcttctctgttccagggtgaaaaggctcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagcagcgatatctttcttgaagtgtggagcccagaactgcacacagtatccagatgagctctaactagtgcattgtacagtctgaacattactgcccttgttttaaattctacacttttgacaatataccctagcattctgtttgccttttttattgcttccccacattgtttggatggagaaagtgag

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21063 lncRNA upstream 274145 36973064 ~ 36973283 (+) True G16984
TU21047 lncRNA upstream 565876 36681339 ~ 36681552 (+) True G16969
TU20933 lncRNA upstream 1348912 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 1798257 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 1865645 35381497 ~ 35381783 (+) True G16806
TU21081 lncRNA downstream 110671 37414114 ~ 37418490 (+) True G16998
TU21083 lncRNA downstream 110671 37414114 ~ 37414819 (+) False G16998
TU21082 lncRNA downstream 111528 37414971 ~ 37418490 (+) False G16998
TU21085 lncRNA downstream 111528 37414971 ~ 37418704 (+) False G16998
TU21086 lncRNA downstream 121044 37424487 ~ 37424697 (+) True G16999
AMCG00016951 mRNA upstream 687447 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 722797 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 945535 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 995213 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 1045226 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016960 mRNA downstream 781847 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 1018522 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 1034202 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 1092256 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 1097287 38400730 ~ 38415204 (+) True AMCG00016972
TU20555 other upstream 3146565 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 3199708 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 3574808 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 4389988 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 4744172 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 1192608 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 5087854 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 6822771 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 7351209 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 12099276 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile