RNA id: TU21081


Basic Information

Item Value
RNA id TU21081
length 4377
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G16998
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37414114 ~ 37418704 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attatttagcaaaaaaatgtttaatctctCCTTGATGCGTGTGTTTATTTACAAGTAGTAAATCTGCAAAATAGGAAATAGCAGAATATTTACACAATGAGCGTTAAACAGCCAACTTGTCACAGTTGCTTCAAGTCTGAAAcaatcttaaaaatgtaatcagtatTCTTATAGTATTAAAATtcctttgattattttatttaatgttttgatccTATGTTTAAAAAGGATTGCTAAATTTGATTTGCCACaactataaagaaaaataaagaaaggagcCACACTGTTACAGAGTACTTTTGGAAAAGCTCTTGTGATATGGAATGACGTGAAACCAAATCTCTTCGATATAAACGGGTCtgaaaactttttattttttagttgctATAATGGGTAGATTAAGGAACACTACTCGACAGCAAGCAGTTCTCAAAAGGCAGGATAATGAGAGAAAATGTTGTGTAGGGTGAAAAACCAGAAATGTACTGTAGCTGAGAAGGCACTGTGTGCAAAGCAAATGCTGAGTGATACCACAAGTTAATCCAACAGTATTGTCCTTTCTTTCCAGCCTTTCTGTCAGAGGtgtcaaaaaaacatttttccttgctgaattaaaaatattttcgtACCATTCAATGAAATGAGTTGTACAATTAAGTCTCTATCTTATACACAAAGTGGCAAAAGTTAaaggagggggggtggggggtgggaggggggaaatacaaacagacaaaatCTTCAGGAGACCAAAGGCCTCAAcacttgcatttttaaaagtaactcTTTCTAAAATCTAGAGCAGTCATGCAATAGTCCACAGCCCACAGCCAGCCCTCCCACCCTCCCTAACccactaaaaaacaacaatggaaaaacataaaaaaaaaaaaaaaaacctcctgAGACTttgaaaattacaatatatccAGCGGTTTTACAATCTTCAAAGACTATCCTGCATAGTGATAGGCTGCTACATATTAAGTAGATTGAACTTGTGCCTGCTAAAGCCATTAGCAGTACAATCTGTTAAATGGTGTATTACTGgtaatattactactacataGGCCACACTAATCAAAAATTGGATGACCACCAATGATCAAGTAGGGCAatggtgttgaaaatgtattaatacccTAAAACCAAATAACTAACACTGATATCCTGCACCACACTGTAGTCTGAGAAACAGAGGAAAAAGTTTTAAAGACTTTAGACAAAACCTTATGGAACTCACCATCCTTAAATGcacttgcttaaaaaaaaacccaTGGCTCAGTGAATCTGAAAATGCCCtgaactatataaatataattcccTATACACCCTCCTGAAACATGGTACACAAACCCCACCCTGTGGGTAAGAAGAACTATAGTTGATCTTCATCCAGGCTACTACTGGATTCAGAGGACAGTGATCCATAGTTAATTAAATGTGGTAAAACAATCTGTTTGGAAATGTGTCCCCTATTATGCCTGTTTGAAGTTCTGGTTGAATCCTAATGTGTAAAAGTCTATCACTAGCAGATTATGGCACTCATTCAGCTATTCCCAAAATAAACTGATGTCCAGTACGTTTTGATGTAAACCTCTTGCAGTTCCAGTCAGAGATGATTGGTCCAAATACACTCATAGGGTGTTACACCTTGGGGAGGGGGGCGTGATTTCTGTTTAAAAGTGTCCCAGTACTTGAGTGACCTTGTTGAAAAACCGGACAGTTTAGTTTCTCAACACTGTAACAGCAGGAGTCTTTATGTGCAGTAACAAATTTTAAGGAAAACATATACATAGTTTCTCATTTGTTTGTCATGGAAGCCGGCTCCCCCCACAAGCTTTTAGAGAAAGATGCAACACAAAGGTTCTTCCACATAATGCAAAACACCTTATAGGAAAAGAGGTGTGAAAGCTCATGAGAAGCAGTCCATACTGAATTATATAAAGTTTGTAAGTGTCACTTTTGCAGTTTGCTCTCCCTTGTATGATTAATTTTGTGACCTTGGCAAAATTAGGTCTTGCAACCTACCTGAACTGCAAATAAGGTAGGTGCCATCTTGCTTTCTGCTGAGAAACTGAATGCTTCCCCAACACGAATGAGAGTGTAAACCATGCTGTAGCAAAAGGTATTTTAGTCAtagactttttttaaaacaaaattctctaAACAAGCACAGACATAATTAAGCGGCAATTGTCACACAAGGCTAAGATTTCTATTGGTCTTCATTCCCACTTCACAGCTGTGAAATACCGGCtttataaaatactgtacagtacacCAGCAATGCAAGTCAATCATTTTCTATGACCTCGGAGGAACTGGCTTCCATGATCAATtagtggggaaaaacaaaaaaaacaaaaacaaaaaaaaaacagcttcgATTCTggggagaaaaagcaaaaattaaacaaaacaaaatattctaAAACTACTACTGACCACAGGTCACTTCAGGCAAGAAGGAAACCAGTTTACACATTTCTCACCACAACGTCAAACTTTCAGAGTTTTCACAAAAAAgtccaaacacacaaaaatgacaGTCTTCTGTTTACTCAGGTCACGGGGCTAAAGGGATTATTTAGTCTTGGCCTACTAATgacttgtgtatatatatattttttctccttcgCCTCAAAGCTAACCCTCTTTCTTAGATCTTTACTGCCTCCaatcaaaaaactaaatatgctCTGCATCCTAATCtgcataataatatttaaagtaagCCCGGTGCTGTGTGATTTTCTCCTTCGTTCTAGTACAAGCTAAATGTTCTTGGTAATCTCActatgatgtattttttgttgggTGGGGGAGAAAAGGGCTGGTTCATTTCCATTGGTAGGATAGGATTTAAGATGAGGGAAAGCGAGAAACAtttcatgtgtttttgaaatttaTCAAAGGAATAGCCTCTCGTAAACAGATGAACAGCCCTTCAAATGGGTCCTACTCTTTTGCTTCTGCCCAAACTGCTAAAGAAAGGAGTGTCtgttgatatttaaaatgttccgTACCAGACCAAAAACAGCATTTCCATGCATTCTCGACCAGCAAGTGCAGAACCATCTCTTCAATAATGTACTTCATTTACCAATAACTGTGCAATTGGAAATGCATGTCCGATGTTTTATAGGCATTTTGCAGATATTAACTTAAAACGGCAATAACACTCAGTATTCACCAAGAGTGCTGTTCTGAGAGATATCGCAATGTTAACTACAATTATTCTGTTTTCCAGCGGAAAGGATGGATGCTTAGCAACCACAACACTCGTTTCTACAAACTATTTTTGGGTCCGTTTTAAAACGCCACTGGATGTaatctggaaagaaaataaatgcctcAAAAGCTGCAGCTCCTTCTTGcttttgcaataaaacaaaaaaggatttGCATGTGATGAGTGAAGagttgcaaataaaaaatatacagtacttaTTTACTTCAAAAAAACCCATCAAAAAGACTGTGTGCCTTATAAGATTTCTTCTTTCTGCTtccattttttgctttttcatttttttttcattttaataacttcAGTCACTCGGcatgttaacatttaaattatagcaCATTTTATCATCtaaaaaaatgtctttgcactaaacaacattcaaataaaacatggcacaggacgagtatttttttttctttttgtttttgtcagaaaTATCAAAGCTTATGGAACTCATTTCATAACAGAACCCATTTCATAATATCGATTTAATCTTTTcagttaaaattgaaaaaaaaaaaaatcttttaagcttttaatttattttatcatctttAAAAActcaattgtattttgtttgttttttaatgtaatttcctgTAAATTGTGCAAATTTAGCAGTAACACTAGTGGCAGGTAGCCGGAGAGTGGGCAGTcaagtatatttaaaacaacaacaacaacgacaacaacaacaaaagcaaaaaaaaaacaaaaacacaaaagtccCTTGAGGTTAATAATGTCCCATCCAGGCTTCATCGTGTGGCAGATTATCTTGTGACCAGAGGAACGGTTCCCAAAGCCATGAAGTTGCCATGtctcagttgtttttttgttgtttattctcCTTGGTTCttcattgattgtttttttattgtctgtgaaaagatatcttaaaataaaacaaaagaccaaaacaaaaataatgatttaaatgctCGTAATGGAGACAGGCTACACATGCCCAGTCCTGCGGGATCCACAGTGCACTGCTTTTGTATTCTCAGTTTTTAGTCTGTGTTCAGAATGACGCTCAGGCCAACAAGATACTGGTCTTTCAACTGGCAAGGGCCATGGTGTCGATGACTTGTTCCAGCTTACACCGCAGTCTCTGTCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21071 lncRNA upstream 110671 37247428 ~ 37303443 (+) True G16990
TU21063 lncRNA upstream 440831 36973064 ~ 36973283 (+) True G16984
TU21047 lncRNA upstream 732562 36681339 ~ 36681552 (+) True G16969
TU20933 lncRNA upstream 1515598 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 1964943 35399828 ~ 35449171 (+) True G16814
TU21086 lncRNA downstream 5997 37424487 ~ 37424697 (+) True G16999
TU21087 lncRNA downstream 7176 37425666 ~ 37425871 (+) True G17000
TU21088 lncRNA downstream 8057 37426547 ~ 37426788 (+) True G17001
TU21089 lncRNA downstream 10663 37429153 ~ 37429396 (+) True G17002
TU21090 lncRNA downstream 15868 37434358 ~ 37434868 (+) True G17003
AMCG00016951 mRNA upstream 854133 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 889483 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 1112221 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 1161899 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 1211912 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016960 mRNA downstream 666800 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 903475 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 919155 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 977209 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 982240 38400730 ~ 38415204 (+) True AMCG00016972
TU20555 other upstream 3313251 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 3366394 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 3741494 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 4556674 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 4910858 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 1077561 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 4972807 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 6707724 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 7236162 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11984229 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU155884 False 3430 lncRNA 0.39 3 NC_035909.1 32998225 ~ 33055255 (-)