RNA id: TU21108


Basic Information

Item Value
RNA id TU21108
length 697
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G17021
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37414114 ~ 37414810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctccttTAACTTTTGCCACTTTGTGTATAAGATAGAGACTTAATTGTACAACTCATTTCATTGAATGGTacgaaaatatttttaattcagcaaggaaaaatgtttttttgacaCCTCTGACAGAAAGGCTGGAAAGAAAGGACAATACTGTTGGATTAACTTGTGGTATCACTCAGCATTTGCTTTGCACACAGTGCCTTCTCAGCTACAGTACATTTCTGGTTTTTCACCCTACACAACATTTTCTCTCATTATCCTGCCTTTTGAGAACTGCTTGCTGTCGAGTAGTGTTCCTTAATCTACCCATTATagcaactaaaaaataaaaagttttcaGACCCGTTTATATCGAAGAGATTTGGTTTCACGTCATTCCATATCACAAGAGCTTTTCCAAAAGTACTCTGTAACAGTGTGgctcctttctttatttttctttatagttGTGGCAAATCAAATTTAGCAATCCTTTTTAAACATAggatcaaaacattaaataaaataatcaaaggaATTTTAATACTATAAGAatactgattacatttttaagattgTTTCAGACTTGAAGCAACTGTGACAAGTTGGCTGTTTAACGCTCATTGTGTAAATATTCTGCTATTTCCTATTTTGCAGATTTACTACTTGTAAATAAACACACGCATCAAGGagagattaaacatttttttgctaaataat

Function

GO: NA

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21073 lncRNA downstream 77004 37241759 ~ 37337110 (-) False G16992
TU21075 lncRNA downstream 158323 37241759 ~ 37255791 (-) False G16992
TU21074 lncRNA downstream 165511 37241759 ~ 37248603 (-) True G16992
TU21067 lncRNA downstream 218036 37195762 ~ 37196078 (-) True G16988
TU21065 lncRNA downstream 239951 37173881 ~ 37174163 (-) True G16986
TU21120 lncRNA upstream 400767 37815577 ~ 37816017 (-) True G17033
TU21126 lncRNA upstream 443514 37858324 ~ 37858524 (-) True G17039
TU21147 lncRNA upstream 460440 37875250 ~ 37968168 (-) True AMCG00016959
TU21193 lncRNA upstream 674869 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 910440 38325250 ~ 38326037 (-) True G17140
AMCG00016954 mRNA downstream 712132 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 844103 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016952 mRNA downstream 1134437 36252375 ~ 36279677 (-) True AMCG00016952
AMCG00016944 mRNA downstream 1689081 35724533 ~ 35725033 (-) True AMCG00016944
AMCG00016942 mRNA downstream 1929218 35457197 ~ 35484896 (-) True AMCG00016942
AMCG00016955 mRNA upstream 3617 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016957 mRNA upstream 121063 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016956 mRNA upstream 272205 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016959 mRNA upstream 639863 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016958 mRNA upstream 647263 38062073 ~ 38071943 (-) True AMCG00016958
TU20574 other downstream 3306173 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 3900535 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 3983029 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4235231 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 4915219 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 343347 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 612673 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 639855 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 3801841 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 5393901 42808711 ~ 42864616 (-) True G17842

Expression Profile