RNA id: TU21157


Basic Information

Item Value
RNA id TU21157
length 2659
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G17064
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38062034 ~ 38092679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatatatatatatatatatatatatatatatatatatatatatatatataatctctttttttgttttaatactctacagaaatacatacaatacaatttaaaaaaatcttattggggggaaaaaacaaacatttcaaatgttttccatgTTTCTGATGACATCGATGAAGGCAGCCTGTTATCTGTAGCAGTCCTTTTAAAGTCTCTGCTCCTGAATGCAACAGGTCTTGCATTGTTCTCTTCTGCTGCAAGTTCTCACCCATGGGAGAGAGCCAGTCGTCGCAATGAAAATCATCTGCCTGTGCAAAATTCATATCACACAATTCAGTAACTCGACACAAGCTTCAGACCCTTAGAGaagattttgtaattgtatacaGGGCATCTTCAATGAGATACTTTTCTTGGGTGTAAAGAAGAGCACACATTGAATACCTTTTTGGTGGTTTAATAACCAATAATTATACGGTTTTGTCtaataaacagacatttatattATGAAGCATGCATGCTAAGACTTTGTTTACTTGTGCCCCCCTATAATGCATGTACTACAAACATGTCCTGTTAAACACTGAAATTTGAGTGCAacgtttttatttggtcttttcgatcaacaaaataaattggactaataatttaaaaatctgattcacagttcacaaaatacatttatcttcCCTGCAGATGCAAAGCTACCAATCCGCAAGCCTTTTCATATCCACTGTGCATTTAACAAGGCAAGTTCCACATTGTGTAGATTGAAATTTTCGACAGTGGCTGAGTTTGTAAGTCAGGGGAAAGGGCTCACAACCTAGGAAGCCAATATAACAATTGCTttacattgaaacaaatatagatttatatagaTAATACAATCAAAGTGAGTATCATGTATTCTGTGGCTATTCTTTCCATATTCGATCTGGTAGCACTATACTGTGGTCTATGAGAAGCATCTGAAATCTTGTGTTTTACAATAGAATTCAACCTACAGCACTGATCTGAACACTGATCAAATACAAATCACACGAGCCTTCAGCTGTTGTTccgtaaattaaattaattatatttattatatttattattattattattattactatttatattattgtttcaaatgGGATCAACCTTATTCCAGATACCAGTTCCATTTTGATGCTGTTGGGATGAAGCTTCAGTAGTTTGTGTAGGCAGAAGAATTAATACTGAACTCTTTTTAGGAGCGCACATAAGCATCACAGTGGCTGAGGAGGCAATTCTGGGGATCTAGTTGAACAAGCACACAATCCTCAACAGATATCGATATCCTcctctgaaaatgttaaacaaagcATACTTGTACAAATTACACCACATATTCCTTAAATTAGCAACAATCACAGGCACTGACTCCATCTACAGACTTTCACCAAGGCAAGCAGGAACACTGGGTGAAAATAAAAGATGACTGATATATTCTTGGTACTGGTTTTTCCCACATAAAAAAGTAGAATAGTAATACAGATCATGGGTAAATCAGCTAATGGCAGAGAACACAAATTGGATCAGAAACTATTACAGAGCTGATTAACTGTTTGACAGATGTCCTCCTTGGCTCCATGGCTATATCTTTTTATAATAGCTACCATATGAAGTGCTTTTACGCATTATGTATCACTTTAGGTTGCACATGACTGGTGTGGAATTCTTGAGTCTGATTATGTGGCTGATTACAGTTGATCATATTGGTAGTTATTGTGCAGCGATATCCCAGGCCTTTCCCACcaagtgcaaattaaaaactgtgtacaaatataaataaaatttcAAATCGCCATCCACtcgaatttttttttttttttttttttttttttttaatcctttaacAACATCAAGGCCCATTTGTAGTAAAGCCTATTTGaggcaaaagaaaacaagaaacaaaatgtcttaaatgGGTCCTGCTTTAAATCAAGTCCTTGTTCCTCAGGTCTATACATTTCCCCAAAGACTCCACAGGTTAGATATATAGAAGTCTAATAACTTCCCGACTGTGTCCTCACTCCGGATCCCTGGATTTGTGGGTGCTGGAATTGGTTGATGGTAGAAGCCCGCTGTTGGTAGTGCTGTGAGTTGGCAGCTGCCAGCAACCTACTGCCAGACTGCAGCACAGTCTGCCCTGGGCTCGTGGGGCTTAAGGTTCGTAACCCAGATTGGGACAGTCTGGAGTTATGCGATACTGAGGTGGGGTTAACGGAAGCAGCAATGGTGGCTGTGGGAGCCACACTGGAATCTGTAGAAACGGTTTTCAAGGGGTTGCCCTGGGGTAAGGGAGAGGCAGCGGCTCCCAAGGACAGGTTGTTAAACAAGCTGGTCTTTAAATGGCCTCCACTGTACAAATGTGCAACGCTCCCAGAATGCTGCTGGCCGGTGATACTTGGGTGCCTGGCACTCACAGAGtccacagaggaggaggaagagctgACAGGGCTAGTGTAGGCAGCAGGTGGCGGGGGGGCCTCTTGGGTCAGCGTGTGTGAAGACGATCGGTAGCCATGTCCGGGGGAGGGGGCTGAGTGGCTGAAGGAGCTGCTGTGACTGCGGAATGGAGACATGTTCTGCTGAAGGAAGCCTTGAGACTCGGCCTGGGTCCCTTCAGACAGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21131 lncRNA upstream 75377 37948232 ~ 37986657 (+) True G17044
TU21093 lncRNA upstream 606633 37455176 ~ 37455401 (+) True G17006
TU21092 lncRNA upstream 615608 37446172 ~ 37446426 (+) True G17005
TU21090 lncRNA upstream 627166 37434358 ~ 37434868 (+) True G17003
TU21089 lncRNA upstream 632638 37429153 ~ 37429396 (+) True G17002
TU21183 lncRNA downstream 42494 38135173 ~ 38135840 (+) True G17089
TU21282 lncRNA downstream 298998 38391677 ~ 38392072 (+) True G17165
TU21343 lncRNA downstream 443382 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 532847 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 661842 38754521 ~ 38805946 (+) True G17230
AMCG00016951 mRNA upstream 1502053 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 1537403 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 1760141 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 1809819 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 1859832 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016966 mRNA downstream 229286 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 244966 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 303020 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 308051 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016975 mRNA downstream 355929 38448608 ~ 38454664 (+) True AMCG00016975
TU20555 other upstream 3961171 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4014314 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4389414 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5204594 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5558778 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 403372 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 4298618 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 6033535 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6561973 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11310040 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile