RNA id: TU21167



Basic Information


Item Value
RNA id TU21167
length 1088
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G17073
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38089801 ~ 38117255 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tatttttattatcaaaAATTATTACATCTTTTCTGGTTTTGGAAAGTCCAAACGGTTATAGCTCTgtgtaaaaacattgtttttgacTTAAAAATGCAGTATCCCCTTTTAAAGTAGTCTGCCAGGCTCtaaaagtggaaagaaaaaggTCTGTTGATTCAGCACAGTTTCCATTTCTGTCAGCATCGTTACCACCAGAATGAAAATCATGCTGGAATTTTAGTGTAGTATAGGTCTACCTACAGtatataacatttatacatGGACACATAATCATACATAATGGTTTTTAAGTAAGGTGCTGGTATTTGGGTCACGAGGAGTCTTGTCAGGTTGAAATATTCCACCATGAGAGCAGTCATGTAACCAGGAAGATCCTTCTCGAGATCCAAAAACAGATGGGTGACCATATGACATAACCATAGAGCACTTGTGCGCCTGAACTGTCAGGACAACGATAAGCACGTTCTTGGAACAATATCTAGTGCTCAATCCTAGGTCACACGGAAAGTAGGAAAAAGGCCTCTCTACAATTTTGAGGTCTTCATACTGGCTTGAATGGATTACTTGCTGTACCCACTGAGCCTGTTCTTTTTGTTCTCACCCCACGCTCATGTGGTACATCATGTCATAACCTCCCTGGATGTTTATTCATTGGTGAAGAACCCAATACAGATTTTTGCCGAAAAACGTTTTTtgaagcagcaaaaaaaaaattaaagacagCAGCTTTAAATCCAAATAACCTCCTGCTTTTACACTGAACTCTGAGCAGAACGGAGGGGTGGGGGCAGGAGTTGTCATCGTTCTTCGGTCACTTTTTCGGGTTTGACTCAAAGATCAtttcctcccctctccccacaTTCAAACAAACATCTGGAAATTTGTAACAGtcactataaataaaataaaaagcctattTCAAATTACCAAGATATTGAGGGACTCACAGCATGAATGTGTGGAAAAAGAATTTCACTGCAGCACCGTGGATTATAATGTTTGTACGAGTCTTGTACATTGTAGCTAGCCTAGAATGgttataattgaaattaaaaatcagaTAAAAAAANNaaaaaaaaaaacct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21131 lncRNA upstream 103144 37948232 ~ 37986657 (+) True G17044
TU21093 lncRNA upstream 634400 37455176 ~ 37455401 (+) True G17006
TU21092 lncRNA upstream 643375 37446172 ~ 37446426 (+) True G17005
TU21090 lncRNA upstream 654933 37434358 ~ 37434868 (+) True G17003
TU21089 lncRNA upstream 660405 37429153 ~ 37429396 (+) True G17002
TU21183 lncRNA downstream 17918 38135173 ~ 38135840 (+) True G17089
TU21282 lncRNA downstream 274422 38391677 ~ 38392072 (+) True G17165
TU21343 lncRNA downstream 418806 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 508271 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 637266 38754521 ~ 38805946 (+) True G17230
AMCG00016960 mRNA upstream 2265 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016951 mRNA upstream 1529820 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 1565170 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 1787908 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 1837586 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016966 mRNA downstream 204710 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 220390 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 278444 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 283475 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016975 mRNA downstream 331353 38448608 ~ 38454664 (+) True AMCG00016975
TU20555 other upstream 3988938 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4042081 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4417181 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5232361 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5586545 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 378796 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 4274042 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 6008959 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6537397 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11285464 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile