RNA id: TU21261


Basic Information

Item Value
RNA id TU21261
length 301
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G17148
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38339575 ~ 38339875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTACATTGACTGGCAGGCTGAGCTCAGAAGATACATTGTTTCTGGTGATGATGTACCAGCAGCTGAGAAGGCCTTCATTCTCCTTGACAGCCTTCAGAGTGAAGTCGTTTTGGATACGAGATGTTGCTGTGGTCATCGTGAGCACTAGAGGAGGACTGGCTTTCTTGCCCAGGTACACTGAGACTGGCAGCTCTGTGCCAGTTGGGAGGGTACAAGTAAAATCCACATCATAAAACAGCTTGATGTTATTGTCACCTGAATGGCTGACAATTTCCAGACTGGGAGCCTGGAGGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21253 lncRNA downstream 13538 38325250 ~ 38326037 (-) True G17140
TU21193 lncRNA downstream 222320 38089679 ~ 38117255 (-) True G17094
TU21147 lncRNA downstream 371407 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 481051 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 523558 37815577 ~ 37816017 (-) True G17033
TU21262 lncRNA upstream 508 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 45946 38385821 ~ 38386161 (-) True G17164
TU21283 lncRNA upstream 51795 38391670 ~ 38392072 (-) True G17166
TU21288 lncRNA upstream 53206 38393081 ~ 38393320 (-) True G17170
TU21290 lncRNA upstream 54626 38394501 ~ 38395819 (-) True G17171
AMCG00016967 mRNA downstream 119738 38182302 ~ 38219837 (-) True AMCG00016967
AMCG00016961 mRNA downstream 165251 38171152 ~ 38174324 (-) True AMCG00016961
AMCG00016962 mRNA downstream 175915 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016963 mRNA downstream 193442 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016964 mRNA downstream 224829 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016968 mRNA upstream 20659 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016969 mRNA upstream 166281 38506156 ~ 38513767 (-) True AMCG00016969
AMCG00016977 mRNA upstream 482233 38822108 ~ 38893519 (-) True AMCG00016977
AMCG00016978 mRNA upstream 878949 39218824 ~ 39237899 (-) True AMCG00016978
AMCG00016987 mRNA upstream 1487365 39827240 ~ 39855114 (-) True AMCG00016987
TU21144 other downstream 280636 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 280636 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 581104 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 4231634 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4825996 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 2876776 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4468836 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10149252 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13090980 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13105712 51445587 ~ 51449786 (-) True G19335

Expression Profile