RNA id: TU21363


Basic Information

Item Value
RNA id TU21363
length 1409
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G17230
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38754521 ~ 38805946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatatatatatatatatatatatatatatatttagtttgtgaAATTGCAAAGTAAAATGAGGAAGAAAAACCCACCTCCTGCTTAGTTTGCCAGGCCTTCATTGCCGTATCAAAACCGGAGCCTGAACTGAACACTTCTCCTCAAGCAGTAAACTATGACGCATGGTGTGGCATAGCTTGGATACACTGGATACACAATATAGGATGTCTTTCCAAGCCCTAGAGGTCTGTCAGCATTGATGGATAGCACATGCAGCTCTGCCTTCTTGGAAAGGGGTCCGAGACTTACATCAGTCCACCTCCCAGATGAAATGGTGAATTGGAGTTAGGCTAATGCTAGAATATTCTCATCCAGTGGCCCAGCAGTGTTCACAGTTGACCAAGGGTAATCCGACGTCAGTTTAACAGGGCCGTGCCTCGTTACATTAAGGGTCTCCCTTCCAGCTCCATGCTCTAATCCCATGTTAAGATCTTTTAAGATACTAAATTGGAACATCCAAATGTCTCGGTGAAGGACGAAACCCAGGTTGTGAGATCCCCCTTGTACGTTGCCATTTCCATGTATatcttataatttttttttttaatttcccctgcCCACTCAAAGCTTTATATTTTTGGATGTGGGTTAGATACCTAAATCAactgtgattgtttttaatttttttatttgattgtgcCGTCATGATTTTTCgtcagcatttttaaactggtaccatttccaaaatattttttaatctgtttgttttttaaacttcattaggcatggatttaaaaacatacGGTCAACAACTTTGTGGTGCCCTTTTGAGTGTCCAACCAAACCCATTTCTATGTACAGTTCCTTCAAGTTCTGAACCAAGGTATGCGTACTACAATGTCAAATGGAAGGAAAATTAAGCACAATTACCTCTAGTTGGAAATTGTTTGTTAGATCAAGAtagtttaaatttgaaatggAACAAGTAGCCTTGTTTGTCTCTTACTGAAATCAGCTTGATTTGGGAAAATAATTTGGTAAATCTACCAGTTACTGCGAAAGGGCAAGCAGTGGACCATTTGTTATTTAGATCCATGCACAGTCCTGTAAAGGAATGATTCAGCGGTGAAATTATTTTGGGATGGATCATTTTATTCAATGATTCTGGCATGGACAGGATGCTCCTGTTCAAACCCCACTTCCTGTACTGTAATACCAAACCTAAATCTGTGGCAATATGACATTATAACTGTTTTACACTTCATTGCTTGTGCAGTTATTtaatagttttgcatttttagagggaaaaaaacaacaaaacaaatacatattttggtaatttttttctttgctttgatagaagacatttgtaatttgaaaactttgtgagggaaaaaaaataaaaaaatattttgaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21350 lncRNA upstream 128498 38625526 ~ 38626023 (+) True G17221
TU21343 lncRNA upstream 218188 38536061 ~ 38536333 (+) True G17214
TU21282 lncRNA upstream 362449 38391677 ~ 38392072 (+) True G17165
TU21183 lncRNA upstream 618681 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 637266 38089801 ~ 38117255 (+) True G17073
TU21428 lncRNA downstream 273469 39079415 ~ 39079897 (+) True G17274
TU21437 lncRNA downstream 445554 39251500 ~ 39254490 (+) False AMCG00016979
TU21543 lncRNA downstream 984143 39790089 ~ 39790567 (+) True G17361
TU21569 lncRNA downstream 1462479 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA downstream 1462479 40268425 ~ 40284772 (+) True G17381
AMCG00016971 mRNA upstream 229744 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016973 mRNA upstream 262477 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016974 mRNA upstream 282630 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016975 mRNA upstream 299857 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016972 mRNA upstream 339317 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016979 mRNA downstream 433127 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016981 mRNA downstream 465327 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016980 mRNA downstream 499334 39305280 ~ 39323121 (+) True AMCG00016980
AMCG00016983 mRNA downstream 569314 39375260 ~ 39396596 (+) True AMCG00016983
AMCG00016982 mRNA downstream 593811 39399757 ~ 39429289 (+) True AMCG00016982
TU21320 other upstream 250889 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 4653658 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4706801 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 5081901 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5897081 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 3585351 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5320268 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 5848706 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10596773 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 10907578 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile