RNA id: TU21710


Basic Information

Item Value
RNA id TU21710
length 1976
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G17491
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41671378 ~ 41673353 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCCTcctgacacactcacagataATTTGAACAACTTTGGAAACCAGCATAGCATTCTGCAACTGCACATTACCTACTGTGCAGCCCCTCCATGAGGAATTGCACAAAGCAATGCCCACAACATCCCTAATAAGAAGGGATAACGATGTCTATTATAAATTGCTGCACTGTCcctcatttaaataaagaaaggatGAATGAAAACTAGAGCTTATCAAAAGATATATATGCTGAGCAAATCGGTAAATAGCAGATATGGGTACCATATAACACAAATCCAGTGCTATTATAAAGATCCCATTTAGGTTCCACCTTCATCTCTGATGAATGAAAATAACCTGGTTAAACTTTAGAAGGGTGCttacttgtttgcatttctgcTGGTTGTAGAGGTGATGTCCTCTTAGTTGACTGGTTCCCTCTGTAACAACCCAAACAGGGCCAGCAGGCCTCCAGGAAAGGGGGGCACTGGTTCAGTTAGGTCAGCCCCCCTGTGTTGAACAAGTGGCCAACATTGTAGGAAAgattaatgaaagaaaacattctttttaaaataatctgaattgTCAGGTGATATCTAGAGGCATGTTTGCAGTAGACACCTGGTTGTGTGAGCTTGACCATTTCATGGACCGGTAAAAGTAtgtgttaattataaacaacAACTGGAAGGATTAATGGCACTAAAACATCAAAGCCTTAATTACAAAGACTAACATTCATAGACAATCACCTATGCTTTGGGAATAAGGTCAAAATCCAGCCAGGTGGTAAACCTAAATATCGGCCACATACACTGaaaatttgtattgaaaaataagGAGGATGCCATCGGTCTGACAATCTTCAAAATCCTCAACCCTCAATAGACTATTGGGTCGAGATTGTGTATAATTGAACGGGCATTATTCAAAAGATGGTGACATCTGTATGGAAAATAGGATGACGTTTCTTCTAGTTGCTTAGCACTGTACATGGTTTGGTGTGTTTTGGGGACATAACATATTCAAAATGAGTAGAACAGGAATGTACAGTTTTCCAGCCTGGTAATGGGCCTTCTAAAGATGCGTCAGGGCAGAAAAGTATCATGAAAAGAAATTTAAAGGGATAGTTAAGAGTTTTACCAAATCAAACCTCATGTGTTGATTCTATTAAGATCATGGTATTTGCACCGTGTCTAAAAGGGTATCcagtctctttttttcttcacactttTCATCATGAGTTTTCATCACCAATCCATCTTAATCAACAATTCATCACAGACAATAAATCACCAACAAAACATTAGTTAGAAATACTTAAAAgtgctataataaataataaataacagatacagtacatattcatttacaaattacataaaacctcaacagagcaaataaactattccaaaacagccttttattaaatcctagATAGCCACAGCATTTCTAGTtcatttttcaactctttaatctcaccCCTTTTATCAATAACTCTGGCTACCTGCCCAGCATAGGCAGacttcctacagaaaactaccaAGCCCAGAATCCATTACTGTCAGTGTGTATACATGGGGTGTGTTCACCTCACACCCGACTTTCATCATTCAGAAAGAATATGACCATTTAGCCAATGAATGCTCAGACTTTccagattctgtgcagaatgactgAAGTCTGTGCGTTGTTTGGGTTTACAATGCGCAGGCTTGCTTGTTCTTTGGTCCTGTGTGTAAATGAAGATGATCCTTGGTGTCATCATGATTGAATACAATGTCAGTTTCACCTGTCAGCTTTGCATTTCCTACATAATGTACAAAATTTAATTCCTTTGTAAAACGTGGATATACCAGCAGGTGATAAATGTAAAAactacagcaaaaaaaatatattaaaaaaaaaaaatctacattgaGTGACTGCCCACAATAAATATTCACTTCAGCGCATTACATTTAGATGCAGGTTCATATACATgtattcctcc

Function

GO:

id name namespace
GO:0046036 CTP metabolic process biological_process
GO:0046131 pyrimidine ribonucleoside metabolic process biological_process
GO:0046132 pyrimidine ribonucleoside biosynthetic process biological_process
GO:0046134 pyrimidine nucleoside biosynthetic process biological_process
GO:0009147 pyrimidine nucleoside triphosphate metabolic process biological_process
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0072528 pyrimidine-containing compound biosynthetic process biological_process
GO:0006220 pyrimidine nucleotide metabolic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process biological_process
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process biological_process
GO:0009218 pyrimidine ribonucleotide metabolic process biological_process
GO:0009220 pyrimidine ribonucleotide biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21691 lncRNA upstream 65987 41601948 ~ 41605391 (+) True G17482
TU21622 lncRNA upstream 425859 41245302 ~ 41245519 (+) True G17424
TU21617 lncRNA upstream 454569 41216495 ~ 41216809 (+) True G17419
TU21569 lncRNA upstream 1386606 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA upstream 1386606 40268425 ~ 40284772 (+) True G17381
TU21717 lncRNA downstream 14657 41688010 ~ 41690199 (+) True G17498
TU21735 lncRNA downstream 40457 41713810 ~ 41716989 (+) True G17514
TU21741 lncRNA downstream 68997 41742350 ~ 41742773 (+) True G17518
TU21821 lncRNA downstream 303042 41976395 ~ 41978666 (+) True G17580
TU22180 lncRNA downstream 1379733 43053086 ~ 43112636 (+) True G17882
AMCG00017000 mRNA upstream 1001 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00016996 mRNA upstream 175107 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00016997 mRNA upstream 206557 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016998 mRNA upstream 214176 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016994 mRNA upstream 224768 41433692 ~ 41446610 (+) True AMCG00016994
AMCG00017011 mRNA downstream 270196 41943549 ~ 41952515 (+) True AMCG00017011
AMCG00017010 mRNA downstream 280394 41953747 ~ 41957167 (+) True AMCG00017010
AMCG00017017 mRNA downstream 393519 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017018 mRNA downstream 421058 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017022 mRNA downstream 436676 42110029 ~ 42110696 (+) True AMCG00017022
TU21320 other upstream 3167746 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7570515 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7623658 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 7998758 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 8813938 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 717944 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2452861 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2981299 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7729366 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 8040171 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile