RNA id: TU21735


Basic Information

Item Value
RNA id TU21735
length 3128
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G17514
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41713810 ~ 41716989 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctCAGTTCATGTCATTTATTTGGTAATGCTTCAAGCTCATTATACAACAGTATTATCTCCTCTCTTAACTCTCGTCTCACAGAATCTTTCAACATACTTTAAGCTTCACAACACTTGAGAAAAATGTCCtttacctttttaatatttttgaaaaaacaaaacaattacagtcCAGTCTTCCAGACACATTCTGATAACCTATCTTTCAGCTTCTTCCACCCGATTCCATCTGATACTTACAAACCCCCACCAGTCACCTCTCCAAAGAACATTACCAAACAACcatgagagaaaacaaaaacaaaaaaagcaattcaCCGTGtgtaaaaactataaataaatgttctagAGGATAAATCTGAacaatacttttctttaaaaagaaagaaaaaaggcataTATTTTGGATCATTTATAGTGATTATGATGCCACATTGATTCCTTTAACACATGTGActtttatacaaaaacaaagacacaaacattaCTCCAAAAATAAACGTACACATGAGAttacaaaaaactgaacacaaaGATTTTTGGCAATAATTTAGCAGTCATATTTTGTGCGGTCATGGGACAGTCCACCACAAATCCAGTGACTACGGCTGCACTGCAGAGTACATGGCATGAACAGctacagtatttaattaaattgtaataattacCTTCTGCTTCTCTTTTAAGTGTAATGTGGTGGCAATTACACTGCAAATGATTACCTGATGTAAAAACACCCAAACCTACATCATACTGGCTGTTCTGCACATGATTTATTATACAGTTTTACACAATAGACGTTTCACCTGCTGATGGCTATTTTTGTACATGTTCTGTTCCGTGCGATTCGTTAACACTCACTCCCACCACCTGTACAAACCTAAGACCCTAAACGGTAACAGTTTCCATTTCTGGCTTCAGAGGGGTCAGACATGAGGAGCTGCTGATTGCTCCTTTTACATCTCTACAGCAATACTGCTACAGTCTGCCAATTCTGTCAATGCAGCCTACAAAGTAAGCCACTCCAATCCTGCCAagggatgaaaaaacaaaaacttgatcTGAAAAAGAGCTACGGAGTAAATAAGCAGGATTTTATGGCCAAATTATATACTCTTTATGATTCCCTCATTCCAATCAACTTAGGttaacttgcagtctggagtaAAGCCCATTGAGTAGCCCTTGGTGCGATCTAGTGTTCAGACTCCTCTTAGAACAGAGCAGGCTAGGGACAGGGCATGCTGGGTAAGTCTCCTCACACCTCAGTCACAGAGGGCTCCGGTTCTAGTCCCTTCTCATCTGATCAGTAAAATCCTCCACcagaaaggaaacattttcatttttttttagtcaTGATACACAGTACTGTGAAGTATAAATCCTTCTATTAAGcttatttaaaagatttttcCTTACTGCTGTTTCTCCAAGTATTTCTCTTTCACTGTGCGATGTCGACACTGAAGACTAACTTTGAGATCCAATTGCTTCCTTCTGCCCCCCTTGGCACCTTTGCCATCCTGGGTTATAATCCCCTGTGGGACTGACTCCACTCTGCATTACCCAGTGATGGTAACCCTAGGTTGTCGTAGGGCTGGCCGGGCAAGTGGCCTTGGATCTCTAATCTTTCAATGGCAGGCAGGCACTCGGAGTGAGATGCTAAGTGCTGTGAATGAGGCTGCCTCGGCCAAGTCCAATACTCAGCACCGAGTTCATAGTTCATCCTTCGTCCTGAGCACACAAGGGTAGTAGAGAGAAAAAAGCACAGGAAACCAGACCCCCTCCCCTTCACAAGAAATCACAGCAAATGGTCAATTATCCAAGTGTGCCCTCATCCCAACCCCAATTGTGACATCCTGAACCCCCCCCTCCATCCATACACTCCTCCAGTAATAGAGCACCTCCCCACCCAAACAGTCAGCCCAGCAGGTACAAATCAACCTACTGCCAGCTTTCCCCACCATGCCCAAATGCTCTACTGATTGTCCTAAAAACATTCTGCTGGTCATTGTCTGGATACGATGTAAACACTATagattctaaaatatatatctataaacaatatatatgtatatgtatatatacatacacacacacacacacacatacttatacatatatacacactaatacatatacatattggTGTGATTTTGTCAGTAAGTGGGCAACAGTACTGTGAGGTGGTAGATAGCAGTGTCCTTGGGGCCTGGTGAGTCGATGGCAGGATGGCAAACACTCCCTCCCCCACCATGCTCTCCCTCAGTGTCAGCTGATCTCTCTGTCCCAAGACTGCAGGCCTCACTAGCAGAGCGGCAGGGGGAAAAATATAACCCACAAACAAGAATCCTGAGGAGCCAGAGCTGCTGTCACCCTCTTCCCTGCTGGTCCGAGAAAGGGACCCAGGTAGGACCCACACTCACAACACCACAGTCTAGTAGAAAAACACGACAGATGAGAGAAGCCGCACTGAtgctggttaaaaaaaaaactaaacaaaaaaactaaacaaaacaaaaacaaacatttgaaaaaaaagaagtgcTTTTCATAAACTGCGGCGGTGGGTTCCAATACTGTACAGGTAAGACTCAGCACCGGGTTTGTAGTTCTCACACCTGTATGGGCCGGCTGCAGTCTGTGCCCTCCATCCGAGAGCAGTCTGCGCTCGCCTCGCTGGTGTCCATGCTACAGTCTGAGGACTCGCTGTCACTCTGGTCCATGCGTTCTGGCTTGGGGGTGTCCCGCACGGGGGACTGAGGGGACTGGGGATCCGGGTCACCGCCCCCGGCTGCACCCTTGGCCTGCCGGATGCAGTTGAGCCACTGCTGCTTGTTGAAGGTATCACTGGCCTGGAAGGAGTACGACTGGGTCTGTGAGCCGCAGCGGAAAGTCACACGAAAGAAGTTCTTGGCTGGAAGAagaagggggaggggaaggaggTTAGGGATGGATGGAGGAGGGACGCTTGGGCTGAAATGCAGCTCCAATCAAAAGCAGAGTTTGTTGACTTCGGCTAAGGGACAATTACACTGCAGCACAAAAACGGCATAACTGGAATCCTGCAGACTACAAAAACAAGAGGATAGGAAGCCAAATGCTGAAGCTGAAGGTGAAACTGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21717 lncRNA upstream 23611 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 40457 41671378 ~ 41673353 (+) True G17491
TU21691 lncRNA upstream 108419 41601948 ~ 41605391 (+) True G17482
TU21622 lncRNA upstream 468291 41245302 ~ 41245519 (+) True G17424
TU21617 lncRNA upstream 497001 41216495 ~ 41216809 (+) True G17419
TU21741 lncRNA downstream 25361 41742350 ~ 41742773 (+) True G17518
TU21821 lncRNA downstream 259406 41976395 ~ 41978666 (+) True G17580
TU22180 lncRNA downstream 1336097 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 1518831 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1677304 43394293 ~ 43394499 (+) True G17969
AMCG00017000 mRNA upstream 43433 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00016996 mRNA upstream 217539 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00016997 mRNA upstream 248989 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016998 mRNA upstream 256608 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016994 mRNA upstream 267200 41433692 ~ 41446610 (+) True AMCG00016994
AMCG00017011 mRNA downstream 226560 41943549 ~ 41952515 (+) True AMCG00017011
AMCG00017010 mRNA downstream 236758 41953747 ~ 41957167 (+) True AMCG00017010
AMCG00017017 mRNA downstream 349883 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017018 mRNA downstream 377422 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017022 mRNA downstream 393040 42110029 ~ 42110696 (+) True AMCG00017022
TU21320 other upstream 3210178 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7612947 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7666090 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8041190 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 8856370 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 674308 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2409225 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2937663 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7685730 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7996535 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile