RNA id: TU21741



Basic Information


Item Value
RNA id TU21741
length 400
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G17518
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41742350 ~ 41742773 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCCACTTCTTTGACGGGGCTGCTGCTCACCGTCTGCACTTCCAGGGCGCAATTGGCCCTCTTGGCGACCAGGTAGAAAGGGTAATCCTTGGCCACCATGCTGGCAGTCTCGGAGGTCACAGCAGAAGCTATAGCAGCAGGGTAGTCAAAGGCAAAGCTGTGTCTCGCAGCCACGGTGCCCGCCAGCTCTGCCGAGTTCAAATCCGCACTTAAACGGCTGCCAACATGGCCCGGACCCTGTCGCGCACTGGGGAGAatgagccgagccgagccgagccgagcgcACCGCCCCCCGTGATGCGGGCAGCACGCCTCCTCCTGGGAGCtgttacagacagacagacagacagacagacaggcagacagggggAACCGCGCCGAACAAACGACCCTCCTGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21735 lncRNA upstream 25361 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 52151 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 68997 41671378 ~ 41673353 (+) True G17491
TU21691 lncRNA upstream 136959 41601948 ~ 41605391 (+) True G17482
TU21622 lncRNA upstream 496831 41245302 ~ 41245519 (+) True G17424
TU21821 lncRNA downstream 233622 41976395 ~ 41978666 (+) True G17580
TU22180 lncRNA downstream 1310313 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 1493047 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1651520 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1727297 43470070 ~ 43470846 (+) True G17988
AMCG00017000 mRNA upstream 71973 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00016996 mRNA upstream 246079 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00016997 mRNA upstream 277529 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016998 mRNA upstream 285148 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016994 mRNA upstream 295740 41433692 ~ 41446610 (+) True AMCG00016994
AMCG00017011 mRNA downstream 200776 41943549 ~ 41952515 (+) True AMCG00017011
AMCG00017010 mRNA downstream 210974 41953747 ~ 41957167 (+) True AMCG00017010
AMCG00017017 mRNA downstream 324099 42066872 ~ 42069674 (+) True AMCG00017017
AMCG00017018 mRNA downstream 351638 42094411 ~ 42100315 (+) True AMCG00017018
AMCG00017022 mRNA downstream 367256 42110029 ~ 42110696 (+) True AMCG00017022
TU21320 other upstream 3238718 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7641487 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7694630 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8069730 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 8884910 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 648524 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2383441 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2911879 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7659946 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7970751 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile