RNA id: TU21955


Basic Information

Item Value
RNA id TU21955
length 3131
RNA type TUCP
GC content 0.47
exon number 7
gene id G17697
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42391297 ~ 42397787 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTCCTGGCATtaaggtacaaacatttcaggactttcctactagcagtttccctcggtttttttttccttagtggaacatctcccattgtcagagctccctgtccccctggtccctagtttaaaagattctcaattactctgcacatacgctctcccaatgcattagccccccttctgtttagatgtagaccatctggtcttctatcccagaagaaagaccaatgctccataaatctaaaaccctcttccctacagcaagatttcaaccatgtgttaaactttctaatctctgcctgtctccctggccatgcatgtggtactggaagtatttcagagaaaactaccgtggaggttctgctctttagtttctttcctaactctttaaatttgtcttgcagaacctctgtccttccttttcctatgtcattggttccaatgtggaccatgaccagtggattccccccggctttggccagtagcccatctactagtttagggagatctgcaacctgaacaccaggcaggcaagatatcatgcgggtctccttatcactagtgtgatctacgcctctaagaatcgactctcctactataactacctccctgttctggggcagagtgggcaccatggtgctcaactgccctcccatcaccctctgagctgtcactgtccaactcggtgtccagcagttggaacctgttgggcatttctagctcttggggtgtctctaagggatgtgcgtgcccttttctgtggttacgacctactaTAACCCAGCAGTtttctacactttcctgctctaagttCTCAACTGTCCTAGTTTTTGGCGTGCACACTATCTCTCTAATTGGCTGATTGAcaaattcttctatatcactacaatacagcgcagatcaacaagctgagcctcaagatcacggaccttgatctctaggacttaaacatgccgacaacgttcacaaatgaaatcttcttggatgagttaatccaggaaaacaataattctgcaaacctgacactgtagtggccacatgcttctaaatgttacagttttttcagttaaatgttacagttttttcagtaaatgttacagtttttaaataaatgttagtttttccagtaaatgttacagttttttcagTTGACTGCGAGTGTCCTTCCCCTAAGCAGCACTTCTGATGAAATGGAAATCATTATGATGTGTAGCATAGCTCTTGTGAGCTCACTGGCTGAATTGAGGGGTTCATGCTCATTTGTAttagtagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaattaacCTCGCACAGAGACCGAATTTGAATatgaatttcatatttcaacTGTTCCCTTTTATCTCCCTCTGTGTTTCCTCATAAGACATCCCCCTTGCTGAGCATTGTTAATGATTATAGACTCCCTCTCCTCTTCTGAAAGTCAATTTGGGATTAACAAGAGCAGGTCCGGACCCACACTCAGGCAGTCAATCATTAAACGCACAATAGAGCAACCCACAATCTTCATCCTGACAAAATAACATGGGCAGGTTTGATTTTCATTGGAGGATTCCGCTACATGCAGCCCAGCAACCCTGCCTCATAAATTTCCCAGCCCACATCTACCACCGCCAAACCGCCAAACTACTGCACTGGTGCGCAGGGATACTCTTGATGCATTTCGGGGGAAAATCTTTCATCTTTTTACTGAGGCCTTCTTAGGAGTGCTCAGAGAAAAGAGCTGACTAGGGCCTGAGAGGGTAAAGAAGTCAATCCTCATAATACGCATTTCACTGGTCATGCTTCCCCAGTCACAAGACCCCTCTGGCAGTTCCTGGCCAACAGGCAGTGAGAGCTGTGAGAGTGACAAACCAGCAGAAAAACCTGCCCCAGAGCCCAGCTTTCACACCCATCTGTACAGGCTGTTTGGACGAGAGAAGGCCGAATACTTCCTCAGGCCCCAGTCCCCTCATACAAAGACAAGCCCCTGGGTGCTTCGGGTCCTGGAGCAGATGGGAGGTGAGTGCAGAGGCGCTGTGGAGGACCCTCAGGGAACAGTCGCACCTGCAGCTGATGAAGATGGAGCCTCTGTTCCTTCAGACCCCCTTAGCCTGGAATGTGAGCAGCAGCCCAGCGCGCAGGAGGAGGCGCCAGCAGCAGAGTGGATTGGTGGGCCTGATGTAccgctcagctcagctcagccaGGACCACACCAGACTCTTCATCACCAGCAACCCCCTCCCCAACCTCAGTGACCCCTGTGGTGAGGAGGGGCCCTGCAGATTCCTCCTGCAGGAGCCGGCactgggggctggggggggtcCCCAAGGGCTGAGGAATCGCGTGCAGGAATGTCAAAGGGGAACACTGAAGAGCTGTGCCATTTCCAGGTCACCTGGGAGGAGTGGGTTGGCTGATGAAGCAGATGGAGTGGACTTCAGGACCAGGTGttcacactgcaagaagaaagGTAAAAGACAGAATCTCTCGAGAGCTGGCAGAGTTTCGCTGCCCCCCCTGAAGGTCAGAGTCCAGTGTCAGCTGGGAAACAGAGAAGGGACAGAGCCACCACAAGAGAGGCCACGGCTGCACATCCCTCCTCTCCGCCAGCCAGCTGGGCCCTGAAATACTAGCCTCTTGACCCCGGTTGTAGGCTCTCTTACATGAAAAAAGCTGCTGGGAGCTACAGACATTGAGGCGGGCTTCAATGTAGGGAGCAATTGTGGACGTCATCACACTCAGGGGGATTGATTTACAGGGTGTGTCTTCCACAATCCACCAATATAGCATTGTAGCTGCTGAtttaagtgaaaatgaaaaggcaggTTTTTTCCTTGTAAAGTGCACTCTGTCAATGGCCAGCATGCTCCACTAGAGGACAGTATTGCATCattatacagttaaaaaaaaaatatgcaccTCTTGATTTCCAACGCATCTGTATTAAAAGTtggataagaaaaataaacgtACAAATGTACCTGTTTTCCAAAACGGATTTGTTATgcatcaatatatttaaaaataaatttcagttttgctatgtattctttaaataaacaaagaagcaACTTGCCAAAATGTAATAACACTCAAATCACCGTTTCTTCatgtaaa

Function

GO: NA

KEGG:

id description
ko04390 Hippo signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 412631 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 648524 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 674308 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 701098 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 717944 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 655299 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 838033 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 996506 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1072283 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1102383 43500170 ~ 43500476 (+) True G17987
AMCG00017026 mRNA upstream 14362 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017032 mRNA upstream 80090 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017033 mRNA upstream 100466 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017024 mRNA upstream 115614 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017025 mRNA upstream 123584 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017027 mRNA downstream 30410 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017029 mRNA downstream 79964 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017028 mRNA downstream 117639 42515426 ~ 42551765 (+) True AMCG00017028
AMCG00017023 mRNA downstream 155432 42553219 ~ 42561656 (+) True AMCG00017023
AMCG00017037 mRNA downstream 184565 42582352 ~ 42594094 (+) True AMCG00017037
TU21320 other upstream 3887665 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8290434 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8343577 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8718677 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9533857 32856361 ~ 32857440 (+) True G16289
TU22431 other downstream 1728427 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2256865 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7004932 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7315737 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 8154093 50551880 ~ 50552985 (+) True G19113

Expression Profile