RNA id: TU22024


Basic Information

Item Value
RNA id TU22024
length 1417
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G17754
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42550325 ~ 42551773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCTCTTCCAGGaaactttatttaaagttaCAACTGAATCAGAGTTTTGTTGTGTATACAAAcaacttttttcagtttctcaaaaaaggatttatttatattaaccaTTTATACTTTATTCACAGCAGCATCCATATAACCAtgtcccccacacacacacacatatatgcagtggcaatacaaaaaacaagaatgaaataaaatacttagaCATTCCACccacaaatgaaagaaaaacaaaacaaaccttaaCTAGGTAAAGAAAAGAAtataaaagcaattttttttttttttttaactttttccaCACTTGGGCTACAGTGTTACCATGCAGATGATTAAGTGATAAGAGTTTAAGATCAGGTTCTGCAAAAGAGTATACACAGGGCTGACCCAACTGTATATGAAGTGAACATCAGTTTCTCAggttgaagaaaaataaacaaatttacCGTGTGTGgggtaaattacaaaaaaaaaacaaaaaaGAAATCCAACTTCAGAAAAGGTCTTTGTGGTTCCTACTGCGAAATACAGCATCCATCAGTCACCCTTGCTTTGAGAATTGCAGCTGTACCATTCAGCATCCTCAACTCAACTGAATGAGCCAATATGGATCCAATATGACAATTCTGCCTATGCCCTCTGTCGACACTGCAAGGGAAGCCCTTAAAAAGACAGACATTTCAGCACAGAGGCAGCTCcccacgtgtgtgtgtttttaactgGTGAGGGGGAACCGGCAGTACCCTACTCTGTGGGGAAGGAAGGGGATGGAGTGAGAATCCAATGCACCTGGAGAGTCCATCAATGCAGAGGGGCCAGACAGGCAACCATACTTCATCCAGATCTACTTGGTGCCCAGTGCAGGACTGCAGCACCATCAGGGGGGtattttaatcatcatcatcatcatcatcttctcaCCAGTGTAACGGACTGATGGCACTGCTGACAAAatgaaagatgtgtgtgtgtcaagtgTGCACCTAAATGCCCATCATCACCTTATGCTATGATCGGCAGACAGCAAACCGTGTCCCGTCAACTCACTTAAATCAGTAAGTCATCttaaaattctttaaaaaaatctcctAGTATCGTGGTTGGCTCTCCACAGTTCGTGTCCAGTGAGGGGCTGCCCAATTTAATCCACTTCTTCCATGTTGCTGTACGATGGGGTGTCGCAGTCTCCAGAGTGAGGGAACAGATCAGAGTTAACTTCTGGGGTCAGCTGTGGGGGTCCTTCAGGGTCCAGATCTGTCCCAAACAGTGCCTGGCTAGAggtctgtaaaataaatcagagtTATAAGACAGGCTCTCTCTAACTCCTTTGGCTGAATGACcctatccccccacccccaatctgCTTACAATAGGAAACTATAGGAACAATAGGAAATTTAAACCagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22026 lncRNA downstream 907 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 611791 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 944930 41601924 ~ 41605395 (-) True G17505
TU21621 lncRNA downstream 1305100 41244926 ~ 41245225 (-) True G17423
TU21612 lncRNA downstream 1672260 40873372 ~ 40878065 (-) True G17414
TU22171 lncRNA upstream 414583 42966356 ~ 42974433 (-) True AMCG00017051
TU22214 lncRNA upstream 684032 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 728464 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 754000 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 1081448 43633221 ~ 43633422 (-) True G18015
AMCG00017030 mRNA downstream 35711 42511057 ~ 42514614 (-) True AMCG00017030
AMCG00017016 mRNA downstream 541976 41971193 ~ 42008349 (-) True AMCG00017016
AMCG00017015 mRNA downstream 580678 41957610 ~ 41969647 (-) True AMCG00017015
AMCG00017013 mRNA downstream 608716 41939367 ~ 41941609 (-) True AMCG00017013
AMCG00017014 mRNA downstream 611762 41937289 ~ 41938563 (-) False AMCG00017014
AMCG00017036 mRNA upstream 114939 42666712 ~ 42670113 (-) True AMCG00017036
AMCG00017041 mRNA upstream 136726 42688499 ~ 42712888 (-) True AMCG00017041
AMCG00017040 mRNA upstream 170099 42721872 ~ 42737952 (-) True AMCG00017040
AMCG00017048 mRNA upstream 258003 42809776 ~ 42815644 (-) True AMCG00017048
AMCG00017047 mRNA upstream 264627 42816400 ~ 42820740 (-) True AMCG00017047
TU21619 other downstream 1333094 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 4491386 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 4491386 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 4791854 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 8442384 34106690 ~ 34107941 (-) True G16563
TU22128 other upstream 256938 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 5937354 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8879082 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8893814 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8893814 51445587 ~ 51449786 (-) False G19335

Expression Profile