RNA id: TU22026


Basic Information

Item Value
RNA id TU22026
length 4550
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G17755
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42544360 ~ 42549418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaCAATACAGGTAATGTTATCCCTTGAGCAGCATCCGACTGTTTGGAAGTACAAATTATTGCTGGGAAGCTTGACAGAAATCGTCAATGCTTTTCCCTAAAAAGCTGAATTTACAgaatacattcaatttttagatttacatttatttagttaaatattgtaaaaaggcattttctcacatacacacatgcatacataaatatacgattaaaataaattatatattttagtgttACTCGGTTTGAGATTATATTCAAGACCAATCACAGACCCACACTGCCTAAACAATCAGAGTACATCGTTAGCGTCAGCACTTGTATTTAACCAGAAAAAAGCCTTTGCCTACAGTTGTATCTATTGCGGACAACgcttaaacatttgaaaatacaacGTAACATTAGCATTCcgatttgcattttataaagaaagcctgaaaaaaacatgcatagaaaagggaagaaaattTAGACTGCACATATTACACAAGGACACCTGCTGGAAAAGGTTAAAGGCTTTTTACGTCAATGTTTTTGTGCAAATTGAAAGTATACACATGACAGAAGATCAAAAGAAGGTGGAAGAAGGGATTAACACGATTATGAATATATCCCTGAGAGTCTCATCCAAATACTTGGTTGCTGTGCACAGTACATTTCATTGTGTGCACAATACCCTTCCACACAATATGTTTACTGTTCTTTAAAGTTGTACAATCAGCAGAAAACATCCTTAATCTTAATGAATCTTGACACTATTACCAAGACCATCTGAATGTAGCCGCTTGGTGTGACACCGTGATGTCAGGCTTGACAACTGAAATTGAATATCCACATTTCACAGACTGTACTGAAACACTCCTATCtccaccccaaccccccccccttttttcttgggggattacattaaaaaagtcaACTTCAAAACCAAGAATTACACAGACctctttagttttaaaatgtgttaaataaaatggcaaatataaatacatgtattgtcCTATGTATTGTGCTGCAGTGGTGTCACTCAAGATTGgtacacaacaacaaaaaacagcatttgacaaatttaaatgaaactaCATATAGTGCCCTGTCAGGGCGACTACACATCATGCGAGTGTGGTGTCCTATCACAAGACTTTGCTCAGTTCATACGTTTCCTGTTATAGATTCTTGACAGGATATAGATCCTGTACAATGTGCTTCTAATAAATTTGTGTTCAGATTATatgccaggcactttcaaaagACACCAAATAATTATGCATCactgggagaaaaaacaaaaacaacaacaacaacaacaaaaaacatgctCATTAACCATTCACATTAAACTTGTCCCACCCAAACAACTTGGGAATGGCTCCTACAGTATTTCCTAAATGATTTAttcagggatttttttttttaaataaatacaaaatcaaatttgaTATTTCATTTATCCTCTACAGAAGGAATTCCTTTATGacatttcttaaattataaTCTGTTAAATTAGCAAATTttaaatttgtacattttcaagattacatttagttttcttttcagacatccgtacacattttgcattttatccCTCGTGATAACCTTAGAATGACCCACTATGTTAATATTGTAAACTTACAAGTCTGTATTTAGCTGCCTTTCCTTAATAGttcagaaatgttattttatgtgaaaAGACCTTCCAtttaatatatagtaaaaaATGTCAATCAAGTAAAATTACTTTTCAGAATTTCTCAATGTGTTACTAAATTCATATACAGCATGGCCATGGGCAGACCATTTCGATGCTTCTGTACCTGATgaccatattttaaaaatacacgcagtacacatttatataaacacataaaaacagtaTGTTCCATATAGGAGCTCTATCTCTGGCACATCCATTaactttaaacaaatgtgtttgttcatgATATCTTTAATAGTGTACACCAACAGCAAAGGCATGGACAGCCTTAATGAGACACATACTGGCCAGCTCTTCTCACTAGTAAAAATGTTGACAATATACAGGTTTCCACATTAACCAAGTGTTGTACCAGATAGGTGCAGCACTCCTGGAAACTATATTTTAGTCCCTATGTTCTCCCTGCTACATTCCCTTTTCAGTATCCCCCAAAAAGTGCACATCAATTTGTCTTTAAAAGCAGTCATTGAAACATGAGTGTGAGTATACAAGTACCCTCCAGCTCAGAGTTACCCTCGGATAGTAAGGTAAGAGCATATTGTGTTTCTTCTGAACCAGCAAGTTgaattataaattgtatttaaggCTGGGTAGAAATTCTGGACTCAATTTCACAAGCATAGTTCTCAGAGAGGAGTTTGGGATTCGCAAAAGGAGACAGGACTAGAGATAGGGCCATTCCCCCTTTTAAAATAGAAGACTAATGTCACCCAGCATCATTATCCATCCAATTACATCCTTAGTCACATATTTGAAAGTAACAAATCAAAGATTATCAGTCTATGGGATGCCAATTTGTTTTGGCCATCTTGAATTGGACCAAAATCTTTCCGATTCCTCTTAGAaggcaaacattaaaaacagtgaaaaatcCATCAGAACACTAACGCGAGTCTTCGTTCTGGTTCTATGAAAGTTAATACAGCGAAACAGCCAAATTtactatacatatacactaccgttcaaaagtctggggtcacttagaaatgtccttgtttgcaaaagaaaagcaaattatttgtacattaaaataatataaacttgatcagaaatacagtgtagacattgtcaatgttctaaatgactattgtagctggaaacagctgatttgtaatggaatatctacacaggcgtacagaggcccattatcagcaaccatcagtcctgtgttccaatggcacgttgtgtttgctaatccaagttcatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtgttgattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagcaattgtgggatCGATTACAGGCTCTGCGAAATTAAGGCTATTCCATgcaagaaattgccaagaaactgaagatctcgtacaacgctgtgcattactcccttcacagaacagtacaaactggctctaaccagaatagaaagaggagagggaggccccgaagcagtcagctggtattctgtctataatggagtggccagcacagtcgccagatctcaaccctattgagctgttgtgggagctgcttgaccgtatggtacgcaagaagtgcccatcaagtcAATCCagcttgtgggaggtgcttcaggaagcatggggtgaaatctcttcagattacctcaacaaattgacaactagaatgccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttgacgaaagcaaagtttgaaggacaattattttttattaaaaatcattatttttaaccttgtcaatgactatatttcctattcaaactcatttcatgtatgtttctgagtgaccccaaacttttgaatggtagtatATATATTAAGGTGTATATATTAAACTGAATGATGGACTGTGAGGCTGTATAAATCTTAAAAGAACCCTCTGCAATAtcctgtttatatataaaataaaatgactaattaaaataacaggATTAACAGTTTTAGAGGTTAGTATccaattctaaaaaaaaaaaaaaaaaaaaaagcaagcagaGTTTCAGTGTTTGACAAATTCTTCACAAATATTtagcaaaaatgtttttccctcCCCCACTTTCAGAATGTCCAATCACATCCCTCATATACCCTGGGATTCTATTTGACCTGAATTCCATCTGCTACTACAGTCATCCAGTCCTGCAGCTGCCCACCTAGCTACAGCCGTGGCTAATAATCTCCCTTCAGCCCTAGATCCCCCCAGCATTCTGGTAACTCTGTGACCCTGCCCTGATGCTTGCTACTCATGTGTTCGAGACTTCAGGGTGATTGGCGCAGTGCAGCATGGACGTGTCCTGCCATCTCTAGGCTGTAGGGTGCATCCTTGTCTTGTACGCTTTATAATACACAAGATACCACAGAGGGTCAATATACACCTGCAGCAAAGATCAAGCCCCCGTTTTGCAGTCCATTTTAATGGCAGAGAACAACGTATATGCCAAGAGCAGAACAGCCCATCTACCCTGCCCCCCTCTCCTGACCCTGCGTGTGACCAGCTCATCTAGCTCCATCGGCCCTGAGAGATCAGGGGATACAGCACGTTGAGGACCAAGGCCAGCAATGCCGCCAAGGTGCCCAGGATAAAATATCGGACGCAGTCATCGTCTGAGTAATCGGAGAGGCTGTCCAGTGCCCCCGAGGCTCGCTGGGTCTCCACTCCTGCCCGCAGCCTTCTGCTTGCTCGTGGCCCggcctcttcctcctcttcctccagttCCTGCCATATTAGAGAAGCCTGCGATTTGCGGAAACCTGCGTCAGCTTCTGGAAAGGTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21787 lncRNA downstream 605826 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 938965 41601924 ~ 41605395 (-) True G17505
TU21621 lncRNA downstream 1299135 41244926 ~ 41245225 (-) True G17423
TU21612 lncRNA downstream 1666295 40873372 ~ 40878065 (-) True G17414
TU21574 lncRNA downstream 2259537 40280538 ~ 40284823 (-) True G17384
TU22024 lncRNA upstream 907 42550325 ~ 42551773 (-) True G17754
TU22171 lncRNA upstream 416938 42966356 ~ 42974433 (-) True AMCG00017051
TU22214 lncRNA upstream 686387 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 730819 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 756355 43305773 ~ 43308614 (-) False AMCG00017060
AMCG00017030 mRNA downstream 29746 42511057 ~ 42514614 (-) True AMCG00017030
AMCG00017016 mRNA downstream 536011 41971193 ~ 42008349 (-) True AMCG00017016
AMCG00017015 mRNA downstream 574713 41957610 ~ 41969647 (-) True AMCG00017015
AMCG00017013 mRNA downstream 602751 41939367 ~ 41941609 (-) True AMCG00017013
AMCG00017014 mRNA downstream 605797 41937289 ~ 41938563 (-) False AMCG00017014
AMCG00017036 mRNA upstream 117294 42666712 ~ 42670113 (-) True AMCG00017036
AMCG00017041 mRNA upstream 139081 42688499 ~ 42712888 (-) True AMCG00017041
AMCG00017040 mRNA upstream 172454 42721872 ~ 42737952 (-) True AMCG00017040
AMCG00017048 mRNA upstream 260358 42809776 ~ 42815644 (-) True AMCG00017048
AMCG00017047 mRNA upstream 266982 42816400 ~ 42820740 (-) True AMCG00017047
TU21619 other downstream 1327129 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 4485421 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 4485421 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 4785889 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 8436419 34106690 ~ 34107941 (-) True G16563
TU22128 other upstream 259293 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 5939709 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8881437 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8896169 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8896169 51445587 ~ 51449786 (-) False G19335

Expression Profile