RNA id: TU22180



Basic Information


Item Value
RNA id TU22180
length 242
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G17882
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43053086 ~ 43112636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


taagggcgtctgccaagaaataaaaataaaaataataatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggacaGCATCTTGCAGtcgatggagatttgtgggttGCACATCCATGGCACGAATCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 1074420 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1310313 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1336097 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1362887 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 1379733 41671378 ~ 41673353 (+) True G17491
TU22213 lncRNA downstream 123184 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 281657 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 357434 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 387534 43500170 ~ 43500476 (+) True G17987
TU22414 lncRNA downstream 989390 44102026 ~ 44103399 (+) True G18077
AMCG00017042 mRNA upstream 200792 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017045 mRNA upstream 203420 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017046 mRNA upstream 208775 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017044 mRNA upstream 243384 42796198 ~ 42809702 (+) True AMCG00017044
AMCG00017043 mRNA upstream 259738 42758813 ~ 42793348 (+) True AMCG00017043
AMCG00017054 mRNA downstream 5582 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017056 mRNA downstream 196059 43308695 ~ 43314951 (+) True AMCG00017056
AMCG00017055 mRNA downstream 205054 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017066 mRNA downstream 253191 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017065 mRNA downstream 259022 43371658 ~ 43384849 (+) True AMCG00017065
TU21955 other upstream 655299 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4549454 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8952223 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9005366 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9380466 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1013578 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1542016 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6290083 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6600888 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7439244 50551880 ~ 50552985 (+) True G19113

Expression Profile