RNA id: TU22213


Basic Information

Item Value
RNA id TU22213
length 217
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G17909
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43235820 ~ 43236036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggataatattcagttgttggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaatgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtgtggaagcaataaaaaagtcaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22180 lncRNA upstream 123184 43053086 ~ 43112636 (+) True G17882
TU21821 lncRNA upstream 1257154 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1493047 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1518831 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1545621 41688010 ~ 41690199 (+) True G17498
TU22284 lncRNA downstream 158257 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 234034 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 264134 43500170 ~ 43500476 (+) True G17987
TU22414 lncRNA downstream 865990 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 880930 44116966 ~ 44201038 (+) True G18084
AMCG00017054 mRNA upstream 111417 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017053 mRNA upstream 138305 43095638 ~ 43097515 (+) True AMCG00017053
AMCG00017042 mRNA upstream 383526 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017045 mRNA upstream 386154 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017046 mRNA upstream 391509 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017056 mRNA downstream 72659 43308695 ~ 43314951 (+) True AMCG00017056
AMCG00017055 mRNA downstream 81654 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017066 mRNA downstream 129791 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017065 mRNA downstream 135622 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017076 mRNA downstream 308618 43544654 ~ 43546804 (+) True AMCG00017076
TU21955 other upstream 838033 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4732188 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9134957 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9188100 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9563200 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 890178 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1418616 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6166683 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6477488 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7315844 50551880 ~ 50552985 (+) True G19113

Expression Profile