RNA id: TU22340


Basic Information

Item Value
RNA id TU22340
length 202
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G18015
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43633221 ~ 43633422 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACATcacactaaataaaatattagctATCTGGAACTATAACATATGTTAAGCCTGGCTTTTTTCCAGtcatttgcaatattttctttttccaagtTTTCAGGTAGAAGAACCTGCTCAGATGAACTGAACAAATTAGAATAAATAACCTGAGGAAGTGTGACTGACCTGGGGTGGGGAGTCATTCTGTAAGACCCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22237 lncRNA downstream 324607 43305773 ~ 43308614 (-) False AMCG00017060
TU22218 lncRNA downstream 352358 43280237 ~ 43280863 (-) False AMCG00017061
TU22214 lncRNA downstream 397185 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 658788 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 1081448 42550325 ~ 42551773 (-) True G17754
TU22342 lncRNA upstream 348 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 203755 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 502766 44136188 ~ 44138542 (-) True G18101
TU22503 lncRNA upstream 743575 44376997 ~ 44377221 (-) True G18156
TU22511 lncRNA upstream 754021 44387443 ~ 44387995 (-) True G18164
AMCG00017059 mRNA downstream 268352 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017060 mRNA downstream 324595 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017057 mRNA downstream 331413 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017058 mRNA downstream 336932 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017061 mRNA downstream 346618 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017067 mRNA upstream 874 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017075 mRNA upstream 224071 43857493 ~ 43872095 (-) True AMCG00017075
AMCG00017074 mRNA upstream 247856 43881278 ~ 43913423 (-) True AMCG00017074
AMCG00017077 mRNA upstream 468596 44102018 ~ 44125909 (-) True AMCG00017077
AMCG00017085 mRNA upstream 823356 44456778 ~ 44458554 (-) True AMCG00017085
TU22128 other downstream 768605 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2415990 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5574282 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5574282 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5874750 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 4855705 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 7797433 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 7812165 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 7812165 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8222824 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile