RNA id: TU22403


Basic Information

Item Value
RNA id TU22403
length 4344
lncRNA type read_through
GC content 0.37
exon number 3
gene id G18066
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43837177 ~ 43891907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttatgggTTTCAGTcactgagggggaaaaaaacaaatgcaataaacacaGACAAGAACATTCACCTcaataaaaatgttcacttttcCTTATTTACAAAGTttgtaattgaatgttttttgtttacacaTGCAATTTTAATGCACAGGGAAAACACATCTTTCTTTCCATAATAGTGTCTGAATACCATAAAATGCTGAAAGCAGTTAGTAGATCAACACATCAAATACATTAGCTTTACCTACAACcctgattaaatatataaatagtgacCTGGTCCCCACAGAAAGCATATAAACATccattttctgtctaattaGGCACAATGCAGCACAGATAGATAGAAAATAAAGCGAAACCTTGCCACTTTAACTGTAGAGAGCAGTAAGAAGGAAGTAGCTGGTAACTGCTGGATAATGCTAAAAGCACCTACAATCAGTATAGGGTGTGTGGCAACATGCTTTAACTAGTCAGAAGAATCATGGTAAACAACTCTGTGTTTATCATGGCAAGGCAGTAACACAGTTATGTACAATCCCTCATCCCCAattttctttgtattctttTGGCTTCATCACTTTGCCTTGtagggaaagggagagggtgGGGCGGGAACATGTGCTTGCCCTCTCACCGTTTTatggttaatttgttttccatcttttttttttttttaacatgtctTCCTGAAACAGGCCTGCTTGCATACTGGAgcatcatttatatttagaagGTCAGGTTTCACAGTGAGTTCATTTTGCATTCCTAGGTTCAAATCTAATAAAGacaagactgtgtgtgtgtgtttggggggtaGGGGGGGATCCACTGGAATCTACCTACACCACAAAATGGCACATTTTGGCACAACTGGAAGGTTAATAGCTGAAATAAGAACTGAGGGCGTAAATGGCAGAGGCCTTAAAATAGGCAGAAGGCTGCAGGCAGATCCTCCACATTACAAATCTTGGAACATGAATACTGGGCCTCAGTCTCTTATATAAATTGTTTCCAGCTCCTAAAAAGTGTCATGTTTTCAATTACAAAGGGAATTTTAAATGGTATTAATATCCAAAGCTGACATTTAAAATGGCCTAAATGCACATGTTTTGTTAATTGAagaatgtaattaaacaatggAGAGCTCAAAAGGCCTGGGATAGATATTGAGGCACACTGACATAGCTGGGGACAGATCATACAATACCTGCTATATGGATATTTGCAAGGTTTCAGGTCTAATAGcgtttaatgcaaaatgtatcaCAAATTGCCATTAGAATTAAAGATGAATATTATGTGGCCTGAATAatgagaatttaatttaatttataatcttttttaaGCACGTTACATTGAAGCAATACTTATAATGAGCATGAAATGTCTAATTGATGTGAGTAGTAAATTTCAAAACCTCAGCTTTTGGTATTCCCCTTCCTTGTGGCAGGGGTGGACATTTCTCTCTATTCCCTGTTCTTTCTCCTCACTTTTGCACTGTGGCAGAGCAGACTGAAAACCAACCAAATTTCAAGAAttgaaaaagaaggaaagttttgaaaaataaaaggtacAATATGAGTCTGTCCACATGGCTAAGAATATGAGAAAAAGCTTTAGTAATAATGGAGGTTGACCATTATAACTCAAGTACTACTTCATTTGCAGtaaccattttcatttgtttccatcTGCACCAATTACAcccattacaattaaaacatttactgatatttaatccagttaattgtgtTCAAATTACAAGTTGATTTTCTCAGACATACAAAACGTATATCATGCCATACCCTACAGATGGTGCCTACTCTAATTGACTCAAGTAAGTCAAGTTTCACTGCTGAAATTGTTTTGAGGTAGTTTTGAGGGGAATGGAGAAATATTTCAAGGAAAAGAATGTCACATCTTAAAGAAGTTgactggataaaaaaaaatgttgggaCTGAAAAGAACAATGCTCAGGACCAATTTCATTGAAATATAACTGGCAAGCATCCCAagataacaaaagaaaacccaataaaataatttctcatAGCATCTGTGGAATTGTGCCACTGATTTGTCATTTTGAGATCGTTCTTAGCACAAACACCAACTGGAAAATTGTCtttggcctctctctctctctcaaaaagaTGTTAcaattgggtaatatttatttcaatagatCCTCATGGgtgttttttggtgtttttgttgatGAGGGACAGCGAGGTATCTAATACTGTTCTACGGAGCtctaggaagaaaaaaaatggcaaagaaATTACCAAAGCTGCCTGACCAGGCTTCACTTTTCCTAATAGAACTTCCCAGCCACACAAGCTCTGTAAAGAGAGGCAAGGTTTAAAGATGACCACTTCAATGTATTCATTCAAGACAATTATGTGCATACAAGAACATAtcaaaacaaggaaaatgcTAAGATGTGGGGAGGCACAGATCACCAGCAATCTAATAAagatataaatgcaaatatgtttaaGACTGGTAAATAAAAATCGGTAGGATGAACAGAAAGTGGTCCACATCATGTGACCAATTATTACAGGTATTACctaaacagtttaatttaaggGGAAACGTTTATGAAACATACATCAATTTGGCATTGGATTATGATGTCCATCTCTTCCATCAATGAGTCATTCTATGGGAGAAGGGTACCAAATCCAGTGTCCCAGTGACAGACTGAACATGCAATATTATCTCTTTTCAGTAAGGCATAGTGTGAACAACATAACTCCCAAACAGTTCCCTGTGGCTATCTGTTAACCAGGTCAGAGACAACAAGGCATTGTGCGGCACCCTTTTCCTACAGAATTTCCCAAAGCACATTCTGACACACATGTGGGGGGTTACAAGCATAGATTTTTCCAGGGTACAAGAAATCCAGTTTAAACCATGCTGTTAATAGTATGGAAACATCTGTGACTTCTTTCACTTACTGGCATGTTTtgtagattaaaacaaaaagaaaaaaagtgcaaaatgtgtTCTGAGAACTGCAGGAGAACAAACCccatttcttctttttatacAAACTAAGCTACAATTCGCATAATTTAATTGACTCCTCCTTGTGCTTTTACATCACTGTCttcaacattttatcatacaCTTCTTCTTTTAAGCATatttacacaagtacattaAATAAGGTGGGGGAATGTCTAGAGTTGTCATAATATCTTAACTGCTTCACAGAGAGACCCACAGTGAATTTGACCAATCAAGCATCATGATAATCACAAGAGTTACAATCATCCAGGTTAAAAAGCAagcctgtttatttttctttcaggatTTTATATGTGTACTTAGTCTTTTTTGTACCCCAGACATAATCCATGCTCTAATGCTGTTTTGGTCCAGTAGTCAGAGCTATTGCAGAAGGCACTTTCAACTCTGCAGACCACTCTAGTAGACAGAAACAGCATTGCAGGTTTTAACTGACACTAGAAAATTACACAGGATTCTTGTTGCAAGACTCCAGAGTTACATACATCTTTAATCTTTAAATCTGATACATTCAAACTCCGAGATATATATGTTGACTTCAGCAAACCACACATTGTGATATATCTTTTCAGAAGCTGAATGGTTTTCTTACTCCAAAGGTTTGCTACAGTTGGAAAAGTTTTGGACTATGATAAAATGtatcacattattatatatatatatattttttacctgtaCAGAGACAACTTGTTTTGTTATTACCCAAAATGTAAACTTCCTAAAATTAGTACAACCTCACATAACCAGATTTAAATTGGCAGAATCACTTGTAAACACACTAATATTCAGTGGCTAGGAGAGGGAACAAAAACTCAATTTGCCCAACATACAGTATGGATATAGCTCCCATCTCTTCAGAAAAAATATCAGATGAATGTAAAGTTATCTACTTGGCAAATAAAAGTATCTGCTGCAGAACTCCTCTTACTCCacaggtgtatttaaaaatgaaaaatacctGTGATTTGGCATTGTGAAGGCATAGGACATGCTGGGCTGATCTACATTTACCAACGTGTGACAGTTCTCTAGCTTTCGCTTACAGTATCATGACAACTCTAGGATGTTAAGCGGGTCGTTGTTACCGACGGTTACACAATCTTTAGCAGTACACAAAATGGACCTTGAGGGAAATGAAGAGCGGGGCTACGAGAGAGACAGTGAGTCGTGAATAAGGATTACGTCATCACAGAGTGAGCAGGGTGATTTTGGGATTGATATGGCCGACAGGACGAGGGCGGGGGGTTCAGGCCTCAGCTCCTCCGGGACTTGGAGTGCTGGATAAGCCACTGCAGTGTGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22342 lncRNA downstream 202755 43633770 ~ 43634422 (-) False AMCG00017067
TU22340 lncRNA downstream 203755 43633221 ~ 43633422 (-) True G18015
TU22237 lncRNA downstream 528563 43305773 ~ 43308614 (-) False AMCG00017060
TU22218 lncRNA downstream 556314 43280237 ~ 43280863 (-) False AMCG00017061
TU22214 lncRNA downstream 601141 43235805 ~ 43236036 (-) True G17910
TU22443 lncRNA upstream 244281 44136188 ~ 44138542 (-) True G18101
TU22503 lncRNA upstream 485090 44376997 ~ 44377221 (-) True G18156
TU22511 lncRNA upstream 495536 44387443 ~ 44387995 (-) True G18164
TU22583 lncRNA upstream 761548 44653455 ~ 44655994 (-) False AMCG00017091
TU22596 lncRNA upstream 907547 44799454 ~ 44829026 (-) True G18219
AMCG00017067 mRNA downstream 177575 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017059 mRNA downstream 472308 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017060 mRNA downstream 528551 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017057 mRNA downstream 535369 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017058 mRNA downstream 540888 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017077 mRNA upstream 210111 44102018 ~ 44125909 (-) True AMCG00017077
AMCG00017085 mRNA upstream 564871 44456778 ~ 44458554 (-) True AMCG00017085
AMCG00017086 mRNA upstream 591704 44483611 ~ 44503250 (-) True AMCG00017086
AMCG00017087 mRNA upstream 674013 44565920 ~ 44566162 (-) True AMCG00017087
AMCG00017089 mRNA upstream 681617 44573524 ~ 44600280 (-) True AMCG00017089
TU22128 other downstream 972561 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2619946 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5778238 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5778238 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 6078706 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 4597220 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 7538948 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 7553680 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 7553680 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 7964339 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile