RNA id: TU22536


Basic Information

Item Value
RNA id TU22536
length 3151
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G18186
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44623367 ~ 44714164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatacacacacacacacacacacacacacacacacacatcacggGTAGTAATCATCTGTAAGGATAAAAAAGttttagattttacatttttcacttttttgagtagagcacaacaaaaacaaccttATCTAAATATATAGTGAAATCACATTcctagttttatttgtttgtttatattatagttCAGTAAATTTAGCTTATTAACTAATACACTTCCCTTCACTTTGGTAAACATTCacttcccccccaaaaaaaagcaGAATGTCACAGCAAATCCAAATGTAGCTCAACCATCAGTAGTTCTTTGTATAAATATCAAAAATGGCTGTTTACTTTTATcctaaacaatgtatttgactaaGAACTGTGTACATCTTTGTTtcactttaaatgaaaaacaaacttaaactgGGACATTTTACaggttattaaaatataaaataagcatCTTCTGCATTAAATCATCAATATTTCATATCAGATCGATTGTATAGACAGGCTTGTTCTTTCGCAATACGAAGAGCctgattttgtattatatagcagtgtagtatttaaaaatatggataaggattttattaaatactaacCTATCTACTCATTACTCCCAGATTGAAGGCACCTATTTCTATCTACTGATTATATTcttacattgcattttcttcAGTGTAAACAATGAATATTCCCCAAGAAGCAGGATTGCAACATGCAATATTTTTGTGAAACTTAATTTGGACAATAGGCCCAAAAAATTGAAAAGGTCAGGAAAGAAACGCCAGGAACGGTTTAAATAAGGTTACACGCTATGACATACCAATGCAGAACTGCCAGACAAGAAACAGTGAGGTGGGACACCATCCGTCAGTTTGAAGAAAGgctgtattttcaaataatctAATCCGCTGAgctgaaagtttattttttgatgttAAAAGAAACTGATGCTTGTCCACATATTCTGAATTATATTAACTTTTCTCTCTGCCAAAACCAGTTACTCTAGGTCTGCTTGTTTACCCTAtagtaaaatgaatacaaatgcacCTTAAAGATTACATGAAATACAGGCATGTCCTATTAAGCATGTAGTCCCCATGTTCCTCTAAAGAAGGTTTTGATGCAGATTTTAACCTGGATTAAAAAGTTTTAATGCCTTCACACCCTTCACCTTTCCTTTACCatcagctatatatatattttaatataaactaaaatgtCATCAGTGTACAAGACAATACATATAGTTGCTTATGACTGTGGTGAAGCAAGCATATCCCCATGCATGCCCATGCCCTttactacagtacagcacagtccAAAAGTCCcattgggtgtttttttttgccccTGCAGCTTTTAGTTCACTACATTTAGCACCACTCCCAAGaatttgaaatttgtatttttcaggctttaaaaaaaaaaaaaaaactaaacaaaaaggacaaaaatgttttttatccCCAAAGCAGTTTTCtcagaacacaaatgcacatctaTTACAGTACTTAAGAGGAACAGCCAGAGCACCCAAGATGAAAATCCTAGTCAGCATTAAGACAGACGTCCAGAAGGGGAGCCGAGTCAGCTGTCAAAATGGCAGAGGTGGAAACCATTACTGGCCTTCTAGGAAGTTATAGTTTATCTCAAAGCAGTTATTTTAAGTAGACTATGCTGTCAAACTACTGACAACAGGATCTGAGCTTTACCTCGTCTAGGAATACGTCTACATGACCATATCTCCACCCGGGAAGGAGTGAAAGTGGTCGAGAGTCTTGATTCGAAGCCATGCCAACTTAGGAACAGTAATTGCCGACCACTGGTCACacgcattttgtttttacatcgCAAGCTGATCCtcctgaagaaaaagaaaatcctaaaAGTCTTCTGCAGACATTGTTCCTGCTTTTAAAGAGTTCTCATTGAAAAAGGCAGCTGGTGCTTCTGTGTTACACAGATAGAGCAGCACATTTATTAcgtaattttttttgttttgtttttttcctccagagGGTgacaggatttatttattattattattttttttttagagccCACAAAACTGGAACACGGGCAGCTTGTACAGAGTGGACATATGTGCTGAAGTGGTGTGATTTCTTCAGCTCCTGTAAGTGGTGTGCTCCTTACACTGCAGGCATTAAGAAGTCGCCGGAAACACAGTCAGCCAAGGGATAAAACATTGCTGCCAAGGATGTTGCATGAGGGAACTGATCGCTGCAGTGATACCCAAAACAAGGCTAAGGTGATCTCAAAGGGGAAACCAGAGCTTCCCTCCACTCCGGTTTACAGGTCCGTAATTGGATGGTTCCATTCTCCTGaagtagcacagttgacaggaTCCATGCGATTATATGGGCAGTGTTTGATGTGTTTGATTCTCAATGTGTGTGCACGCACTCAGTATTAAAAATGGTCTTGCATGTGAATTAATCTCTGTACTGGAACAACTCCAGTTTGTCAACAAGTgaatacagatttaattttttttttttttttgtgtttttctttcctctctcaaTACAGTTGGCAAGTCTAGAATATGCTTAAGTGTGCAGATCTTGGAACGCTTTGGTTGAAAATGTGCATATTTGGCTTCTTCTGATTTTTCTAGTGGTTACCAGTCAAGTTAAATAATTTTTTAATCTATGCAGTTTAAGTGAGGTCTAACATTCTGGTCGTCTAGTATGAGGTTACAGTGTGCCATTTGCCTTTTATTCTCAAACGTGAAATATACGCAATGGTAATAAGTTCCAAACATCCGCTTGGCCCAACCCCCATAAAGGAGCTGCTCAATTTATTTATCAAAcacctatgttttttttttttttttttttttttttatattggtgATGGtgcatgtgaaagaaaaaaaatatataaatgttgattCAGTACAGAGGTTTAAATTGCTGAAGTAGGTACGTGTCTGCATTTACATGTACGTCTTTGCATCACTATATGTCCCTGAATCCTTGGCCCTTCAGTTGGTGTCCATGTGGTCATCGCCCGTCTCTGGAGCCTCTCCCAGTGAGGCTGAAGGAGGAGAGCTCTGGGGCTCTTCCCCATCTCGGCGCTGGTAAAACAGTACATACGCTGCCTttgtctgcagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22471 lncRNA upstream 235418 44387443 ~ 44387949 (+) True G18127
TU22469 lncRNA upstream 246139 44376993 ~ 44377228 (+) True G18125
TU22423 lncRNA upstream 422329 44116966 ~ 44201038 (+) True G18084
TU22414 lncRNA upstream 519968 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 1122891 43500170 ~ 43500476 (+) True G17987
TU22555 lncRNA downstream 1966 44669423 ~ 44670878 (+) True G18196
TU22557 lncRNA downstream 3835 44671292 ~ 44671870 (+) True G18197
TU22623 lncRNA downstream 281577 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 318339 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 576027 45243484 ~ 45243983 (+) True G18302
AMCG00017084 mRNA upstream 145577 44468119 ~ 44477790 (+) True AMCG00017084
AMCG00017083 mRNA upstream 169873 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017082 mRNA upstream 212028 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017081 mRNA upstream 237381 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017080 mRNA upstream 251859 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017090 mRNA downstream 25526 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017096 mRNA downstream 47934 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017102 mRNA downstream 200457 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017097 mRNA downstream 214408 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017098 mRNA downstream 235009 44902466 ~ 44923634 (+) True AMCG00017098
TU22431 other upstream 491765 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2225580 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6119735 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10522504 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10575647 34047371 ~ 34047720 (+) True G16546
TU23388 other downstream 4735262 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5046067 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5884423 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5891993 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 8146796 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile