RNA id: TU22781



Basic Information


Item Value
RNA id TU22781
length 348
lncRNA type intronic
GC content 0.43
exon number 2
gene id G18357
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46019341 ~ 46021345 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAAGCGGAACTCGCACCTCTCTAACAGTTGTGTTATAAAAAGTGTGAGGAGAGCATCAGCATTACAGCAAAAATAACATCGCACTCACAGAATCAAGTGCTGAGCCACAGAGCTGTACTAGCGTAGTCGTAGGTGTCACTGGAAACCAAGCTGCTCAAGGATGATAACGTATACACAAAGTACTCTCACAGTTACACCAATGGGTAGGGAGCAAGAGCCACAATCCAACAGAAATACAGCTGGTGTTTGATTTATGAGAAAAGCAATTTCCAAGTCTGGAAGAGAAGCACAGTGCTGCTTGTTTTTGTCAGCAGCATgatgcattattttgtgttgctaATTTCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22733 lncRNA upstream 236874 45782197 ~ 45782467 (+) True G18330
TU22717 lncRNA upstream 492336 45526744 ~ 45527005 (+) True G18316
TU22699 lncRNA upstream 775358 45243484 ~ 45243983 (+) True G18302
TU22639 lncRNA upstream 1033260 44985796 ~ 44986081 (+) True G18255
TU22623 lncRNA upstream 1066377 44949034 ~ 44952964 (+) True AMCG00017099
TU22789 lncRNA downstream 79721 46101066 ~ 46101623 (+) True G18363
TU22791 lncRNA downstream 84252 46105597 ~ 46106518 (+) True G18365
TU22815 lncRNA downstream 350622 46371967 ~ 46372406 (+) True G18386
TU22852 lncRNA downstream 542625 46563970 ~ 46564202 (+) True G18420
TU22862 lncRNA downstream 584185 46605530 ~ 46608382 (+) True G18430
AMCG00017104 mRNA upstream 791665 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017099 mRNA upstream 1057740 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017103 mRNA upstream 1085092 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017098 mRNA upstream 1095707 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017097 mRNA upstream 1127471 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017112 mRNA downstream 207704 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017114 mRNA downstream 291549 46312894 ~ 46327713 (+) True AMCG00017114
AMCG00017121 mRNA downstream 392057 46413402 ~ 46415356 (+) True AMCG00017121
AMCG00017120 mRNA downstream 395052 46416397 ~ 46419842 (+) True AMCG00017120
AMCG00017117 mRNA downstream 484982 46506327 ~ 46508536 (+) True AMCG00017117
TU22550 other upstream 1363243 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 1887739 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 3621554 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 7515709 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 11918478 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 3381374 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 3692179 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 4530535 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 4538105 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 6792908 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile