RNA id: TU22914


Basic Information

Item Value
RNA id TU22914
length 1520
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G18470
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47028787 ~ 47038523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttagaaTCATAGTAATTAGGAATGAGTAGTTTCCTGTTGTTTTGTCCCTCTGAggcaaaatgtattctgaacaCTACTGAAGATTATTGAACACTATTATTCATTATTGGGAAACATTAATATTGAtagtttcatttgaaaaaaaaaaaaaaaaaaaNAAAGGTAGGTACTGCAAGAATTTCAGGACCCTGTTTAAATGAAGGATTGACAATAACTGGAAATAGACATTTTGTACAGTTGTTGATCTTGTGGTTATAAGAGCTAAAGGACCTCATTTAAAACTCAAAATGAATGTTAATATAATCTTTTCTATAGCTACTGAGCTGAAattggtattttttattttggtgataactggttttgtgtgtgtactacaGATGCAcgcacattttaaaaagaaatcttCATTAATCAAAGTGTCATTAACAGGACTAATACACGGTCAATGAATGGTTACCTCAGTTTTACAAACAGTAGCAAAAAAAtcatttctgttcttttccATGCTTTTACAAAtcattgtttatataaaatgcatcttCTGCATCTGTTATGTTGAACCTTCTATTGCAGACTAGttataacaaatacaatcagGAACATTTGCAAGATTTCTGCATAATCACAACAGCAGTGAAACTGAAACTCCTTCAGTTGAAGACTGTTCAAATGGATAACAAGTTGTGCTTTGCCTCAACGAAGCACTGCACCTTTGTCATCATTTTATTCCACTTTTCCTTTTCCGTTTCTTCATTTTCCTTGTTATTGCAGTAAGATGAGGAAAGCATTGAAGTGTAAATCCACTCCCTGTGCTTGTCCAAATTAAATTGCTCATGAGGGCTACACTACCTCCTATTTTGCATAAACACTTCATTCATCCTTTccttatttatcttttaacCTTCAACTGGACATTGTGTTTCTGTGGTTTATGAATGATGTTGACAttttaacaaagcaaaaaattccctgtttttatttttttattttattttaaactgctatTGCATCCCATGCTGGAATCCATGGACCAGGTGCTCTGTTTCCTTAGAAGAGAAGGAATTTGTATCTTCatgttaatattgtatatagaatgtatttggttttcatttttgtgagcatttttattgttttgaaaagcatgtAATATATAGTTCACAATCTCATTTGGTAAGCTGGTTCttagttatttgtattaaaatacatttggattCAAAAAAGGGAACTTCAAAAGAATATGcctttaatttattcttttgcatatttgtaCAGAATCCTTGTAAACCACACTTTCTTGTCTGCTCTTACTAGTCGTTCTATATTACCTGTTCTAAAACGGGgtgtcaataaaaaaaaaaaaaggtgtgaaAAACTTTGTCATGTGTGCATGaaaactgcagttttgttttttgatttgtctttacaattttaaacatcCAATGATAGTTTTTCCACCCGAGCAAATAATGTAGCTGAGCTGACTGGGTTCCTGTTGCAACATGCTTGGGGTGTCAATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22899 lncRNA upstream 97892 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 108241 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 420405 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 464585 46563970 ~ 46564202 (+) True G18420
TU22815 lncRNA upstream 656381 46371967 ~ 46372406 (+) True G18386
TU23000 lncRNA downstream 440455 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 815869 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 1023876 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1283740 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2168285 49206808 ~ 49211256 (+) True G18791
AMCG00017124 mRNA upstream 136320 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017123 mRNA upstream 220121 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017118 mRNA upstream 407010 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017119 mRNA upstream 428070 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017117 mRNA upstream 520251 46506327 ~ 46508536 (+) True AMCG00017117
AMCG00017127 mRNA downstream 2354 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017130 mRNA downstream 13875 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017128 mRNA downstream 23304 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017129 mRNA downstream 34196 47072719 ~ 47083518 (+) True AMCG00017129
AMCG00017133 mRNA downstream 51846 47090369 ~ 47164242 (+) True AMCG00017133
TU22550 other upstream 2372689 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2897185 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4631000 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8525155 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12927924 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2364196 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2675001 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3513357 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3520927 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5775730 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile