RNA id: TU22974


Basic Information

Item Value
RNA id TU22974
length 2677
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G18519
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47174646 ~ 47308372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTAATAACTAAGCTTCATTATACAATGTAGTTGCTCTGTAATAGTGGGCAGTCTAGCTTTAAGACATGTGATACCTCTCCAGTACGGCtgtattgaaatacacacactaCTTAGTACATTCTAAAGGAGATAGAGCTTGTGCTTAAAGCAGCTTTTCAATGGGAGGAATGAACTGAGGGGAGGCAGATCTGTCATTAAACAGGGATTGATCCTCGTCTTTAAGTAAATGTGAAGCTGCAAATTAACTCAAGATCACTTCAAGGGTCCCCTCCAGTAAAAGGGTGACGCTGTAAGATGATTTAAAGGTGAAATGACAAGGTTTCCACCCCTTAAATCCTGGCTACTTTCTGACAGTGCATCTCAGCCCTGAGATTTCATTCATTCTGCACGCAGGATTGGAGCTGAGCAGAGCAGGGGGACAAAAGAGTTTTTTTCCTAATCCTTGATTGTATAGATTATTTTAGGAATTTATCGGAATCCCTGCCGTGGAATGGATGGATTTAAGACAATGTGTTAAATCTTTTGGATGAACACTAATAGGGCTCTTTGCTGCTGGCTGGATTACTCAGaattGCCCTGCAATGTCCTGGTTCCTGTGTATGTGGATTAGTGCCAGTGCCATGCTGCTCTGTCAAGCGACTCTTTATGACACCATACAGCAGCACCACCTGCCTCGACCAGGTAGGAACGCCATCCAGATACTAGCTTCCATAGTCATTGGGAAATGGTGGTGTGAGATGGAGCCCTGCCTGGAAGGAGAGGAGTGCAAGACATTACCTGACAATTCAGGGTGGATGTGCTCTTCTGGAAACAAAATCAAGACCACAAGGattCATCCAAGGACCTAACAAACCGTTTTCTTAAAGAACTGTAGATGGACTACTTGATAAGATGGATAAAACTATTACAACAAGCAGGCCAGCCTGGATTATTTGTTGCACAAGGTGATCTAAAGGATATTTTttgagtgagagaaaaaaaaaatacaaatgaagacTGTTCAGAAGACAACTGGTGCCAAGGATTTAAAACTACAAAGTACTCATTTGGGTGATGGATCTTGAACTGGCAATTTCATTTCATGATAGTGGCATTTAGAGATCTTGTGTGGCATTTGCAGTATGGAgacattgtttttccttttaaaaaaaaaaaactaaaaaaaaaaaaacacaacaacatcaacCAAGAGTTATTTTGAGGATGTACAAGCATACCTTATGTGGAAGACATATGACTGGGTTTTTCAATTCAGAGACACTCTGACATGAAAATGGATCAGTTGTACTGGATCATACCAGTTTCCTCTTCAGGAAGAAGCTATGGAAATCCATTTTCTAATATCCCCTTCCCACCCTAAAATCGCACCCCTACCCCTCCATCATCATGCTACATCAGCATGCTGGCTTTGTGCAAATCATCAATGCATTACAAAAGCTCTAATGTCTGCTTAAGATgatttgggggaaaaataataattaaaatagtaaaaagttaaatgttgcTTTAGAATCAAGAACACGGTGGGCAACAGTGCCAGTAACCTTGACGATGTCAGTTTATCTTCAGTTATTTGTTGGCATGGTCTATGTATTTCATGGGAGATctctttgtattaaaatattctgtatataAAATTTCAAAAAACTTCATACAAGTCATGTGGTTCACAAGGAGATACAAGAATCTCAACAACACCCCGATGGACAACATGTTTCATTCAAAGCCTCAGATTTATCTATTAATCAGCGCTGGATCCATATTGAAGGTTGTGAGTGGGATTTCTTCTGTTTGTATTGGACAGTTTGCAGTCATTATTTTTGCCCAGAGCAGCTTTAAAACGGCAACTGGATATAACTCTAGCTCTTGTTTGTTGACAAGTGAAGTGTTTTAACACCAGTGGGGTTTCTTTTCCACGCTGTAGTATCTGTGGACATAAAACACTGCTGAGATAAATCtcaaaaaacacagcagcatTCTAGACAATTCTTTCATTGTAAACAAGACTGCAGAGAAAGTGGGACCCTTCTcagaaatcaaattaattttttattttccttttttaagagTTTGACAGAAGATGTTAACTCAgcattatgtttgtttgtagaTTTCGCTTACATAAAACTGAGATGAAAAACTGGcagttaaaaatgaatatggattaaaaaaacagccaacATCTACAGACAACCCCATTAGATATACAGCCTTatcagaataaaacattttttgtatacaAATGTTACTGTCCTTCTATTCTTTTATACATAGAAGTAGTTTGTTGTACTCGCTGCCATCAAAACTTAAAACATGACCATATTCCAAAGCATTTAGATACAATACCAGTCAATAAAGTCACCTAATTACAGTCACTTCTACAATAAAACTTAGTTTACATGCTTTTATTACTCCCAtgacttttaatgttttcattgatCCGTTTTAACTTCTTTTAACACTTCTCTACAGATTAACTTTGATTGTATCAAGTTAATTAGAActgaagtgtttttaaaatcactCGCATATGCCAGTGAGCATGAAAAATGTTGAGTGGGCACAATAAATCCACAAGTCTGTGAACATTTTTAACTGATCCCAGATAAATCTGAGTTCCAGACAGAAAGCAACGTTCTAACATACTGGTAAGtggggctgctgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22853 lncRNA downstream 610444 46563931 ~ 46564202 (-) True G18421
TU22851 lncRNA downstream 611073 46563094 ~ 46563573 (-) True G18419
TU22837 lncRNA downstream 720250 46440069 ~ 46454396 (-) True G18405
TU22792 lncRNA downstream 1068053 46102262 ~ 46106593 (-) True G18366
TU22790 lncRNA downstream 1072458 46101960 ~ 46102188 (-) True G18364
TU22990 lncRNA upstream 79526 47387898 ~ 47388821 (-) True G18529
TU22995 lncRNA upstream 117875 47426247 ~ 47428085 (-) True G18533
TU23024 lncRNA upstream 318891 47627263 ~ 47627521 (-) True G18559
TU23133 lncRNA upstream 745836 48054208 ~ 48054622 (-) True G18651
TU23134 lncRNA upstream 753940 48062312 ~ 48065039 (-) True G18652
AMCG00017132 mRNA downstream 123240 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017125 mRNA downstream 243836 46918360 ~ 46930810 (-) True AMCG00017125
AMCG00017126 mRNA downstream 258568 46906493 ~ 46916078 (-) True AMCG00017126
AMCG00017122 mRNA downstream 567202 46483937 ~ 46607444 (-) True AMCG00017122
AMCG00017115 mRNA downstream 771345 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017137 mRNA upstream 214410 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017136 mRNA upstream 233721 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017139 mRNA upstream 361389 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017141 mRNA upstream 657155 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017146 mRNA upstream 840382 48148754 ~ 48158397 (-) True AMCG00017146
TU22128 other downstream 4310030 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 5957415 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 9115707 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 9115707 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 9416175 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 1180755 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 4122483 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 4137215 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 4137215 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 4547874 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile