RNA id: TU22976


Basic Information

Item Value
RNA id TU22976
length 1767
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G18519
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47174646 ~ 47308372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGGAGGTACGTGTGAAGTTATTGCGGCACACAGGTGTTGTAACAAGAATCGAATTGAGGAAAGGTCACAAACAGTAAAGTGCTCCTGTCTACCCGGGAAAGTAGCTGGAACGACGAGAAACAAACCTTCCTGTGTCGATGCTTCCATAGTCATTGGGAAATGGTGGTGTGAGATGGAGCCCTGCCTGGAAGGAGAGGAGTGCAAGACATTACCTGACAATTCAGGGTGGATGTGCTCTTCTGGAAACAAAATCAAGACCACAAGGaataCCCAGCCGTATTCATCTTTTTAGCTCCAGAGGAAAAGCACTGAAGACCTTAAATCACACAAAATTGAGAAGGAGCATCACATTTGTTTCATAAAAGAAAGGGAACTTCCTTGCCTATTTCACCAGACAAGGGCAAGCATAATTTTGAGATGTCCCAGTGAACTCAGCTGATACCTTCTATCAAAAGCCCATCCAAGATCTTCACGATCTTCTTCAGTGGCTAAATAGATTATTTTCATACCCTCTTTAATCATAGCTAAACACTCATATCCCATGTCCAATCCCTAGTGCTATTcacaataaatgtacattgttaTTTTCTAGACAGTGAAAAATCAGTTTCATTAACAGGAATTCAAATAATCAGCCCCAATGGGCTCACCTGCCAACAAAGATTCGAATACAGTGCCTGAAAAAGCAGTGGGCTGAAAGATAACGCAGTCAAAAACATTGAACAACCATTTTGATTctttaaagggggaaaaaactacagaaaaaacagttaaaatgtctGGTGACTGTGTTTTTTCATGAATACAAATAgcaaacaaatgttattattcaattatgtcACTGAAAAGGACAAAAAATAGTACAGGCAATGGGAGATCGCCAAGTTTTTCTAACAAGCAGCTGTATATTTTTGAAGTTGGACACAAAAAGAGACAGGATTTAACAGTATATCAATGTAGTGTTATTAGAATCCATGTCTGTAGGTTTCAGAAGAACATACAGTCTTAGATATGTGCTTTAATGTTTCAAGAGCCATATGTTTTCTATAAAGAAAACAGAAGGTGCTTTATAATGCCCAAACATGCCATGAATATACCCTAAGTAAAAATACCATCTGCTATTGGCTTTCAGAGCAAAACAGTATtacaatacattcattaaataacatgtgctgttattacaataaaatgataTCATAACACAAATTTAATAGaatgaattatgcatttttttaaagaggacATGTTACCTATTGCAGGACAGTAAACAGTTTACTTTTCTTCATGTAAACTActtgcatttaataaatgttgctGCATTTTTTGTCTGGACTTTTCTTTACACTGAAGGAATGGAATTAATGTCTGAGTGACAAACACAATCAGAGGAATCCACTAATTTAACATTGGTGCATTCATATGTTCATATGTAATACGAACACATTGGAATGATATGAAAAACATGGAAATATTTGCAGGAAGGAACAGTGGAGGATTTATGTGGCCATCATGTTGATTGTGTATTTCTATTTCATTAGAAGTCAGCAATCTTGTTTGTGaaattatatcaattaaaacaatagttGCGGATTTGAAAAGCATTTGCTGCATTTCTTTAGGAAATCTTCCAATTCAATTTCAGATTACGTTTCTGTGACAACAATAAATAacttgaacaaaaaaaaacagaatctgAGAATCATTTGTGCTATTCCTTTTTCCTTTGATAGCTCTTAAAAGCAAATTATCAACATTGATCTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22853 lncRNA downstream 613846 46563931 ~ 46564202 (-) True G18421
TU22851 lncRNA downstream 614475 46563094 ~ 46563573 (-) True G18419
TU22837 lncRNA downstream 723652 46440069 ~ 46454396 (-) True G18405
TU22792 lncRNA downstream 1071455 46102262 ~ 46106593 (-) True G18366
TU22790 lncRNA downstream 1075860 46101960 ~ 46102188 (-) True G18364
TU22990 lncRNA upstream 191723 47387898 ~ 47388821 (-) True G18529
TU22995 lncRNA upstream 230072 47426247 ~ 47428085 (-) True G18533
TU23024 lncRNA upstream 431088 47627263 ~ 47627521 (-) True G18559
TU23133 lncRNA upstream 858033 48054208 ~ 48054622 (-) True G18651
TU23134 lncRNA upstream 866137 48062312 ~ 48065039 (-) True G18652
AMCG00017132 mRNA downstream 126642 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017125 mRNA downstream 247238 46918360 ~ 46930810 (-) True AMCG00017125
AMCG00017126 mRNA downstream 261970 46906493 ~ 46916078 (-) True AMCG00017126
AMCG00017122 mRNA downstream 570604 46483937 ~ 46607444 (-) True AMCG00017122
AMCG00017115 mRNA downstream 774747 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017137 mRNA upstream 326607 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017136 mRNA upstream 345918 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017139 mRNA upstream 473586 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017141 mRNA upstream 769352 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017146 mRNA upstream 952579 48148754 ~ 48158397 (-) True AMCG00017146
TU22128 other downstream 4313432 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 5960817 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 9119109 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 9119109 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 9419577 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 1292952 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 4234680 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 4249412 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 4249412 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 4660071 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile