RNA id: TU22995


Basic Information

Item Value
RNA id TU22995
length 585
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G18533
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47426247 ~ 47428085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGCGATTATAAAATTTGTCCATTATTGCTTACTGAAGCATGTACAAACAAAGCCTTCCAGACAAGAACAATTCAGCAAATGACATCAGTTTCCTTAGTTTAGGCATTCCATAAGCTAGCTTGAGATGGACAAATCAGGCACAATAAGGTGATTTTAAAAGTCATGTGGAAATGGAAGTAATTTACCTTGGGATCAGCTGTGAGCAGTTTGAAGGCCTGATACACCTGGCTCTCTTTAACACCTCCACCCAAGTCTAGAAAATTGGCTGGTTTTCCTCCATGAAGATCAATTATATCACAGGTCGCCATAGCAAGACCTGCCCCATTTAAGCAAGCAATGTTTCCATCTAATCCTATGTATTTCAGGTCAAATTTGGCAGCCTCCATTTCAATTGGATCACTCTCCATCATATCATCCATTGCAAAAATGTCTTTCTGTCGGAATTCGGCATTATCATCAAAGTTTATTTTGGCATCAAAGCACACAACTGGTAGGAGAGATGAGGGCAAATGAAAAGACAGGAGAATTTGCATTTTAGAAAAGCAGTTGAAATCTAAtcttatcattttaattgcattactC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22990 lncRNA downstream 37426 47387898 ~ 47388821 (-) True G18529
TU22974 lncRNA downstream 117875 47174646 ~ 47308372 (-) True G18519
TU22976 lncRNA downstream 230072 47178048 ~ 47196175 (-) False G18519
TU22853 lncRNA downstream 862045 46563931 ~ 46564202 (-) True G18421
TU22851 lncRNA downstream 862674 46563094 ~ 46563573 (-) True G18419
TU23024 lncRNA upstream 199178 47627263 ~ 47627521 (-) True G18559
TU23133 lncRNA upstream 626123 48054208 ~ 48054622 (-) True G18651
TU23134 lncRNA upstream 634227 48062312 ~ 48065039 (-) True G18652
TU23178 lncRNA upstream 742073 48170158 ~ 48171110 (-) True G18690
TU23194 lncRNA upstream 795965 48224050 ~ 48224318 (-) True G18702
AMCG00017132 mRNA downstream 374841 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017125 mRNA downstream 495437 46918360 ~ 46930810 (-) True AMCG00017125
AMCG00017126 mRNA downstream 510169 46906493 ~ 46916078 (-) True AMCG00017126
AMCG00017122 mRNA downstream 818803 46483937 ~ 46607444 (-) True AMCG00017122
AMCG00017115 mRNA downstream 1022946 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017137 mRNA upstream 94697 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017136 mRNA upstream 114008 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017139 mRNA upstream 241676 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017141 mRNA upstream 537442 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017146 mRNA upstream 720669 48148754 ~ 48158397 (-) True AMCG00017146
TU22128 other downstream 4561631 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 6209016 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 9367308 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 9367308 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 9667776 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 1061042 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 4002770 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 4017502 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 4017502 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 4428161 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile