RNA id: TU23088


Basic Information

Item Value
RNA id TU23088
length 2620
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G18607
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48062399 ~ 48065018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATTACCAAAGAGTACTGTTTgctgtgatttaatttattttgtatttttttatcatattaGGGATGCTCATTCAGGCTTTTCAGATGTACAGTTGATTTAATGAGctgcaaagcaaaacatttagcAGATCTTTGTACATTACACATAGGAATGGCTGCCCTCAAAGCAACATTGCACAGGCCCTCGTAGTACAGAAACAAATGGGGCGAGAGCCAAGGCTTGCATTTCTCAACTGGATTGCAGtggcaaatacaaacaaactactAGCAACCTGAATGTTTGGGTGTTTGAAAGATCACTTTAATGTTGCCTTTAATCTTCTGGAAAAGGATGAATATTAAAGCAAATCATGTACATGCCCCACTGTCACTGTCTGAAAGGTGGGGGATACATTTTTAGGGTCCATCCATTCTATCCACCAATCATCCGTTTAATTGTTATTGCtcgtatttttatttttagaaacattGCTGCCCTTGTCTGGCAATATGTTTTGGCAAAGATTTGGTTATGTTCCTATGGTTATTGTTTCCACAGCAACTGCTTTAGCAATTGTTCCTGTGggcaaaaaatacaaaccattCTTCTATTGTGAAAACCAAGATGTATTATGGTTTGGCCAAGACCTGGTTTGACCTGTAAACAAACATAATGCAGCCACTTTAACAATTCGTGTTCCCTTCTTCTGCTGCCTCATCtgttcgatttttttttttttcacgcaTATTTgacaggtgtttttttaaacgATGTGTGCATCTATGTGCAAACATATGGAAAAGCATGTGCTACCAGTCATTGATCTTCATGGGCTCCCGACAGTGAATGGATCCTACCACACAGCCGGAGAAATATTCTTCTGAGAACAAAAGATTAAGCTATACAttctaaaaatatgtatcaCATATACAATGTGTCATTCGTTATACATACAATGACAGAGTGTCTTTTTTTGGAATGTATTTGTTcggtttgtgttatttaaaacatatttaaggTACAATATAGGTGCTATATTGTTGACAGCCTCAacacaatgaacacatttaCTGTCAACTAAacgcaaaagaaaaataaatcttcataaTTGCACAATAAAGTAGGAAATACtccatatttctattttaatactAAAACCAGAAGACAGGTAGCAGAGGGGACAGTCTTGAGGGAGGGAGCTGAAAGGTGTGTGAAGTGTTCAAAGAGCCTTGAGGCTGGAGAGGTGAGAAGTGTCACACTCAGTTTCTTGGAAAATGAGGAACTGGCAGGTTGGTGAGATGAGAGCCTGTTGTCTGTCTTGGCGCAGGCTCAACTCTTTGAAGCATCTGAAGCTTTCGCCTTCACAAAATAGTCACGTTTCATTAATTGTTCTTTGGCTTCAGGAGATCATTAGGAGTGAGTGGACAATCACTTATCCCCCTACATTTGCAGTGTCCACCATATTGAATTGTACACTTtaagcagaaatgtattttattatgttattatgattgttttccctttttaaaaatgtaaatcatactAGAAAGTTATATTTTCTATTGTTTCAATAGATTAGTAAACCCATATTAGGAATATTCTTCTTtagatttgaaatgttttaaaagatgcaaacaacacacattttttattgtttcatgtATTACCTTAATCTCTTACGCTAtcttgcattttgttgttgttgtcatcattgcttttgaatatttgaattatacatCCTACTTTGACAGATTTGTCAGGAGTAAAGCACAGCAATTTTGGGTTTCCAtctagaaatatattttgatcatcgtttatatatataaaacttaattatattcAACGGTGGCAATttggaatgtttttttggtgtttgtcTTGTCTGGCGTgttgtaatgtatatatgtcgacagcacacacaaaacacttttttttttttcagagcaaGAATATTTAGggtttttttcaattatttgttttggggggttttcAGTTGACATTGCAGTTTACTGATAATGTGCtattttaaaccatattttaattttctgagTAGAGACTCTGGCAGAGAcgtttaaaaacacatatatatttattaaacttattTATCAGCTGTGTCCTTTTACCTAAGTTGTGAATATGTGatagttttaatgtatgttgCAAATCACGGTAGAATGAACAGCCGAGAGTATACTGTATGATGAAACTACAGGGAATTAAAACCCAAAGACAAACGCATACAGGACAAGCATTGAATGATATTGTGATATTATACTGTGTATTCTGGATATAAGAGAAAAAGTAGTTTATCTTCTATCCATTTTATTTAGCAGATTGTCCAGTTATTTTGCAAACTGTTGGTCTAAAGGGAATCTAACTTTTGAAGGGAACATTAGCAGATCTTTGCGTTGtagccattttattttgtgtgtatattctttaaactttttttttattgtaaaatgtgcCTCAATTGATGTCTGATTTGCTGCACTAAATAATGATATTGTCCTTTGGACACTTTAAAGGGATTGTACTGATCCTGCAGCTTATGGACTAAGAGCTGCTCAGGTTGTGAGAATGAAATAAAGGATCATATGGGAAATTGTAGcaacaaataaaatggagaatatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23063 lncRNA upstream 207741 47854392 ~ 47854658 (+) True G18582
TU23000 lncRNA upstream 583143 47478978 ~ 47479256 (+) True G18538
TU22914 lncRNA upstream 1023876 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 1131504 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 1141853 46918346 ~ 46920546 (+) True G18462
TU23215 lncRNA downstream 257245 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 1141790 49206808 ~ 49211256 (+) True G18791
TU23352 lncRNA downstream 1315585 49380603 ~ 49382195 (+) False AMCG00017167
TU23406 lncRNA downstream 1371246 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 1517246 49582264 ~ 49670289 (+) True G18908
AMCG00017142 mRNA upstream 172 48012012 ~ 48062227 (+) True AMCG00017142
AMCG00017140 mRNA upstream 111615 47903682 ~ 47950784 (+) True AMCG00017140
AMCG00017138 mRNA upstream 376527 47629116 ~ 47685872 (+) True AMCG00017138
AMCG00017135 mRNA upstream 588570 47465171 ~ 47473829 (+) True AMCG00017135
AMCG00017134 mRNA upstream 633776 47387184 ~ 47428623 (+) True AMCG00017134
AMCG00017143 mRNA downstream 68600 48133618 ~ 48143478 (+) True AMCG00017143
AMCG00017144 mRNA downstream 105278 48170296 ~ 48173353 (+) True AMCG00017144
AMCG00017147 mRNA downstream 147635 48212653 ~ 48216163 (+) True AMCG00017147
AMCG00017154 mRNA downstream 287378 48352396 ~ 48352746 (+) True AMCG00017154
AMCG00017156 mRNA downstream 296330 48361348 ~ 48447697 (+) True AMCG00017156
TU22550 other upstream 3406301 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 3930797 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 5664612 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 9558767 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 13961536 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 1337701 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 1648506 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 2486862 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 2494432 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 4749235 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile