RNA id: TU23133


Basic Information

Item Value
RNA id TU23133
length 415
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G18651
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48054208 ~ 48054622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACCATTCCCCAGTGATCCAGATGAACTCACATGGATGAGTGTTACAACTTTCGATATCAAGAGGTTTGTTTTGTGAATTGCAGTATGTCTCGTGAACCTCCTCCTTGTTCTGATTTAGACAAACAACCTTTCGCTCTCTGCTTCCAGAGCCACAGCTTTGACTGCACTAAAACAGTACCAAATGGGAAAACACATTAGTCATTACtcttctgtatatataatttatgtaaagaTATaggacattttttattatttactttatagACAGAATTGAAATACAAGAACAGGGCTACTTGAGTGAGACACTGAACTAAGGACATACGCACAGTCCTAAACTGCATCACTAATGACATCCGTAGTTTATGTTTAGATAAGGTATTACGTGTTCCAGTCACATTAACTGCATCATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23024 lncRNA downstream 426687 47627263 ~ 47627521 (-) True G18559
TU22995 lncRNA downstream 626123 47426247 ~ 47428085 (-) True G18533
TU22990 lncRNA downstream 665387 47387898 ~ 47388821 (-) True G18529
TU22974 lncRNA downstream 745836 47174646 ~ 47308372 (-) True G18519
TU22976 lncRNA downstream 858033 47178048 ~ 47196175 (-) False G18519
TU23134 lncRNA upstream 7690 48062312 ~ 48065039 (-) True G18652
TU23178 lncRNA upstream 115536 48170158 ~ 48171110 (-) True G18690
TU23194 lncRNA upstream 169428 48224050 ~ 48224318 (-) True G18702
TU23201 lncRNA upstream 178068 48232690 ~ 48237413 (-) True G18709
TU23365 lncRNA upstream 1306046 49360668 ~ 49360937 (-) True G18827
AMCG00017141 mRNA downstream 87617 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017139 mRNA downstream 331948 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017136 mRNA downstream 503610 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017137 mRNA downstream 513177 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017132 mRNA downstream 1002802 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017146 mRNA upstream 94132 48148754 ~ 48158397 (-) True AMCG00017146
AMCG00017145 mRNA upstream 105781 48160403 ~ 48169675 (-) True AMCG00017145
AMCG00017149 mRNA upstream 120590 48175212 ~ 48212486 (-) True AMCG00017149
AMCG00017153 mRNA upstream 162017 48216639 ~ 48217459 (-) True AMCG00017153
AMCG00017150 mRNA upstream 170542 48225164 ~ 48232148 (-) True AMCG00017150
TU22128 other downstream 5189592 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 6836977 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 9995269 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 9995269 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 10295737 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 434505 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 3376233 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 3390965 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 3390965 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3801624 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile