RNA id: TU23178


Basic Information

Item Value
RNA id TU23178
length 275
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G18690
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48170158 ~ 48171110 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTGCTGCAGAACAAGCTCTTCCTTGACTTTGATGTCATCCCGGTGTCCATCCAGTGTCAGCAGGAACTTGAGCTGCGCTATCCTCAGATCGGGGTTTTTGGGTAAACCCTCTTCTTCCAGATTTTCCAACGGCATCTCTGTGGCTTTTGTTTCTCTGGGGTAAGTGCTGAGCTAGTGTGTGTGGACTGTGGGCTGCGGAAGTACAGAGTGAAAGAAACTGACACACCGGAAAACCTCCCCGATCGACCACCACAGAATTTCAAGAAACAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23134 lncRNA downstream 105119 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 115536 48054208 ~ 48054622 (-) True G18651
TU23024 lncRNA downstream 542637 47627263 ~ 47627521 (-) True G18559
TU22995 lncRNA downstream 742073 47426247 ~ 47428085 (-) True G18533
TU22990 lncRNA downstream 781337 47387898 ~ 47388821 (-) True G18529
TU23194 lncRNA upstream 52940 48224050 ~ 48224318 (-) True G18702
TU23201 lncRNA upstream 61580 48232690 ~ 48237413 (-) True G18709
TU23365 lncRNA upstream 1189558 49360668 ~ 49360937 (-) True G18827
TU23366 lncRNA upstream 1190550 49361660 ~ 49361926 (-) True G18828
TU23367 lncRNA upstream 1192639 49363749 ~ 49364302 (-) True G18829
AMCG00017145 mRNA downstream 483 48160403 ~ 48169675 (-) True AMCG00017145
AMCG00017146 mRNA downstream 11761 48148754 ~ 48158397 (-) True AMCG00017146
AMCG00017141 mRNA downstream 203567 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017139 mRNA downstream 447898 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017136 mRNA downstream 619560 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017149 mRNA upstream 4102 48175212 ~ 48212486 (-) True AMCG00017149
AMCG00017153 mRNA upstream 45529 48216639 ~ 48217459 (-) True AMCG00017153
AMCG00017150 mRNA upstream 54054 48225164 ~ 48232148 (-) True AMCG00017150
AMCG00017152 mRNA upstream 68974 48240084 ~ 48241492 (-) True AMCG00017152
AMCG00017148 mRNA upstream 78244 48249354 ~ 48261026 (-) True AMCG00017148
TU22128 other downstream 5305542 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 6952927 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 10111219 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 10111219 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 10411687 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 318017 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 3259745 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 3274477 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 3274477 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3685136 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile