RNA id: TU23194


Basic Information

Item Value
RNA id TU23194
length 269
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G18702
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48224050 ~ 48224318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATGAGGACAAGTTGGTCTTTTGTCTTATTAATTTAggtattcaatttctgtttcaGAGTGTGGGAAGGGGAATGACTCGAACCAGCCAACTGCGCAAACTCTGTCTGACCCCAATTAAATGAGCAATCCCCATAGAGAATGCCTTTATATTAATATGAGAGTAGCTAAGCTTTTCCATCACTTCACTCTTTCAACAAAGAAACTTGTATAATAGGCTGTTTTTATACCACTTTCCATCAATACTTCAAATGAATCCTGAGGCAAAC

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23178 lncRNA downstream 52940 48170158 ~ 48171110 (-) True G18690
TU23134 lncRNA downstream 159011 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 169428 48054208 ~ 48054622 (-) True G18651
TU23024 lncRNA downstream 596529 47627263 ~ 47627521 (-) True G18559
TU22995 lncRNA downstream 795965 47426247 ~ 47428085 (-) True G18533
TU23201 lncRNA upstream 8372 48232690 ~ 48237413 (-) True G18709
TU23365 lncRNA upstream 1136350 49360668 ~ 49360937 (-) True G18827
TU23366 lncRNA upstream 1137342 49361660 ~ 49361926 (-) True G18828
TU23367 lncRNA upstream 1139431 49363749 ~ 49364302 (-) True G18829
TU23368 lncRNA upstream 1140888 49365206 ~ 49366441 (-) True G18830
AMCG00017153 mRNA downstream 6591 48216639 ~ 48217459 (-) True AMCG00017153
AMCG00017149 mRNA downstream 11564 48175212 ~ 48212486 (-) True AMCG00017149
AMCG00017145 mRNA downstream 54375 48160403 ~ 48169675 (-) True AMCG00017145
AMCG00017146 mRNA downstream 65653 48148754 ~ 48158397 (-) True AMCG00017146
AMCG00017141 mRNA downstream 257459 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017150 mRNA upstream 846 48225164 ~ 48232148 (-) True AMCG00017150
AMCG00017152 mRNA upstream 15766 48240084 ~ 48241492 (-) True AMCG00017152
AMCG00017148 mRNA upstream 25036 48249354 ~ 48261026 (-) True AMCG00017148
AMCG00017151 mRNA upstream 99497 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017158 mRNA upstream 268649 48492967 ~ 48494407 (-) False AMCG00017158
TU22128 other downstream 5359434 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 7006819 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 10165111 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 10165111 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 10465579 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 264809 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 3206537 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 3221269 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 3221269 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3631928 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile