RNA id: TU23215


Basic Information

Item Value
RNA id TU23215
length 4513
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G18722
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48322263 ~ 48326805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTCATCAATGCATTCGACATTTCTAACCCTCTGTGTACATCATAAAACAATCTATATCATCCAATGTTTTGTCCTATGAAAACcaaaaagtagaaaaacaaacatgggtAAAACAGCCAAAAACAACCTTTAGGAAATTGGTTGTGCACGTAATTATATGTGGATAATTGAGAATTTGAATAGGCATTTTGAATACTGTCATTACATTGTGAGATTTGGTAATAAGGTGAATTATTAAATTGTCAAATACTCCATACCACAGGTTTTGAAAAGCTAGAATTAACCTAGATCCCCACACCCAACTCTGAGACAATCTTCATTCACGGCTTTATACAGGgcaaacaaataatttgtaacATTATGGTTCACCATCCTCCTGGACAATATTAGTTTCCCCTCTCAGAGCTTTTAAAAGCTCAGTAGCATCCTATAACAGTATCAAAATAAGCCAGGGCATTGCTTTAGGGGGAACCTTTAGAACAAATGGTTAAAAAGGAATTAATGAGGAAAAGCATGATTTCAATTCACTGACAAAACTGAACTTGGTAGATGACAAGATGACATGGTCATCTGCAGCAGTTTCCTGACTTGTTCATTTATAGTTTATAAAGCTTTATGAAGATGCctttttcacattaaaagtCTGCTAAAGTCCAATTTTTTTTATCCTTAactcaaaacacaaaatgagatGCATACTATTGTATATACCGTATTTGTAtacgtgtatgtatgtatacaacacacacacacctccctctctctctctctctctctcgatgtCTCAACATTTGTAGGTTCATTAAACGTTTTAGCTTTAACAAGGGCACATTTCTCTGcataacagaaaatgcatgaTCCTGAATGAAGACAGATTtctattaaattaagtattttatacTCACAACTTTAACCCTATCCAGAAGCATTTATATagtacacattatattttacacatacaCTATTCTTGTTGGTGTGGGAGAGAACAgatttaacaatttatttaatttcatatatacagataaaaacaatgttaacatttttacattaagaGGTAATTATGAGAAAAAAGGTTATGGGAAGACCAAATATACAATTGAAAAGATCAGTTAAAGGTTTAGATACTCATAGTCCAGCTTTTTGCCTGGTTGTCACACAACAATGTGACCTACAGAAAAGTGATATTTTAACGAGaaatatgtaacattaaaatgtacctGTAACAGGAAAACCTACTaggacaaaatacattttaaaccctgaattaaatgcattatatgaTTAAACATACTTTATAATATATTCCATCAAAGCTTTCCAATGCGACTACGGTATGCCTGTTCTGTAGATGCTTGAGCACTGGCTTTCAGCCATGCAGTAACCCAAAGGGCAATTTGCTATTTATATTAAGGCTGAAGGTCGAACCTGTGGCATCATATTCCAACCATGTTTAACAAGAATTTCACTATTTAGATCTCAATGACTAAAATAATGCACCtcttattctttgtttttactgGACCTTACATGTTAAGTAAGccgtattatatatatatatatatatatatatatatatacacacacacacacacacacattttaaaagatgtaaagcagaatacaaaataattccatTCAAGGTACAGTAGAtgcatcaaataataaaaacagtttaaacacaatggaagTGTAAAAATGCAGTTGTCAAAAAGACAGTGTAATCTTTATCCAACATATTTATTCAATACACAGCTCAGCTCCAACACGGTTCTACTAACCAAGTAGTTTTTGGTGATTTTTCCTCACTTTACAAATGTTCCGTCAATGCAATTTACTCATGTTTTTTGTATACatcattttatgttgttgtttctatatacaaatgaataaataacatggCCACAATACGTTTTTCCATgagacatttaaacaaaggGCAAAGAATTATAATGGCACCACAGCAAAATGTTACAATTCTGCTGCCTAGACATTGTGTCAAGAGTAcaaatactataaaataaattcaagaaTTGGATAAATCTTTATTTGTaccatacaaaatatgaattttctAAAACCCCGAAAAGAAACCATTTATTGCCTTCACCAAATGCATGCTAAAACATATATTACtgttataaaggaatatttacACAGAAGAAATCATAGATACCATTTTAGTATAATTTTGTGTATATCCATTAATGtggtattaatatataaagatttaaaaagagGTAGGGTCAAATGAATTATGTTCAAGGTGCATTAACATATTAGAGTTATATTTTatactaatttacatttttgcatgaCAACTAAAGCTGAAGAAATActagtcaaatacattgaaattaaaccTATCATATCCATCCTTAACACTAAACAGTTATTGGCAGTGAAGATTTTAACAATGTGGACCTGCCCTGTGGACTCATGCTGTCAGAAAGGGTCACACTTAAATTTGCAAAACATCATGAAACCCCAAAACGTGATTTCAGGAGAACTTCGTAAAACCCAAAAGCCAAAGCAAGAACAGAAGTTACGCTGTTCTGAGGGAAGCAACATCAACCAAAGAAAAGCTTTTCTCAGTCATTCGTATGTTCTTcatcaaaccaaacaaaactaaaacctgagcaaagtcaaacaaaaaaaaacccgcAGATTTAAGGCTAATTTAATAGTGAAAATCTCACAGATCAAATCATTTAATGATTTGAAAGTTTTTTAGTGCAACAAATGATGGAATGGCTAAACAATTGaaagtgggggtggggtgggggggtagctTCTATGGTACAGTACACGTGTGTGAACGATGAGCAGAGCTGAAATAAATAACGGATAAAAGTAGCAGGCAATACTGCTGGCTTGAAAAGTCTGTCAATTAAGAGACAAGCTGTGATCAAGTAATTTACTTAAAGGACTTATAAAATCTATCTTGATTGctgaaattgtatatattaaaaaagtgtgcATGCCTGGAGAAAGATTTATTATGCAGGAAGAGTGCTGGGTAGTACTCCGTCAATCAAATCTCAAACCCTTTACCCTCCTTTCCTCGCTCGTTTAATTCATCTTCACTGTAGATTTTCAAAGGCCAGTTTTAAAGCTCTGATGAAGTGGAATTGAAACCTTAGGCCAACAGATGGTCCATTTTGTGACTGTTGTCAATTTTGTACAGAGGGAGTCCTTTGACTAGACCTTCATTTTTAAACCTGTGCATCTCCTTTACCTGCGTCAATTACCACATTAAAGCAGGGAGGACACattaattgtttacattttaaaaattactgCATTActtatatgtattcatatataaagCTTAAAAACACTGAGTTGGTATTTATCAGGTTTGCTTAACAAAAGGGCAAAATACGATGACGTGGCACAAACTCTGCCTCTCCCACCTATCcttctaaagaaaaaaataaaattacacacaataaAGAAAGGTGTGGGGAGGTATATCAACTAAAAATCTCAGCGTAAGTGCCAAGTTCATGTCACGCTGAAAAACAGGATAAACTGtctataggtttattaaaaatagtgGGAGTCCTATATCGTAGTCTACTCACaagtatttatctttttaaaaatatatttacactagGAATTTAGATTGCAAATCCATTACGTATAAATTGATCATACTTACActattaaatttatttttaaatcaaactatccttttaaatacacttttgaGCACCAAAACCAAATTTAATGGACCCCTCTCTATGAAGTGTAATAACAGAACATCTAAAACAGTATATAGGAAAACAAACTCTTACTGTCAGATCAGTACAAAATGTCATGAAATGATGCATCTTACCTAAGATTCAAAATGGCAAAAAAGTAGAAACTGTATCGTATATATTCAATGGGTACTTTACATGGAATAGCAGAGTAAGCAATGGAGCAAATGTACTTACTTCAATAACAATGAACTGCGCTCGACGAGCTTACCGGAGGATTTGTGCAGAATGGATACAAGTAGggtgaaaatggatggatgcaCGTGTACACTATAGTGAACATAGCATTGATCCTTCAGGGTGGAAAGCTGCATGCCAGATCAGTAAAACCTTCATTTAGTATTATAgaattatcttttttcttttcttttttttttttttaaagaacttaCGTTCTCAATGTAAAAGTTGCtcagagaaatgtattttctctttaaaaatatcacacatTCTTCACAGAAGTTGTTCatactgtgaaaaacaaatattgtgtaATTAAGTTTAACTAAAGTATATTGTATAAAAAGATAGACTCATTGGTCCATGTTAGGCACTCTGGCACTTTGAACAACACATATTCAATGCATTCCATTCATGATGTGTTGTTTCTGATGTTCTTTTGCATTCAGATCATCTTCGTTGTGTTGCAAAAGGACCAGGTCTTCTTCCCATAACCTGGCATTCTTCCTGATCTCTTCCAGGGAGTATTCTTGCacaacatttccattttcaaaaactgtgACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23088 lncRNA upstream 257245 48062399 ~ 48065018 (+) True G18607
TU23063 lncRNA upstream 467605 47854392 ~ 47854658 (+) True G18582
TU23000 lncRNA upstream 843007 47478978 ~ 47479256 (+) True G18538
TU22914 lncRNA upstream 1283740 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 1391368 46930581 ~ 46930895 (+) True G18464
TU23309 lncRNA downstream 880003 49206808 ~ 49211256 (+) True G18791
TU23352 lncRNA downstream 1053798 49380603 ~ 49382195 (+) False AMCG00017167
TU23406 lncRNA downstream 1109459 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 1255459 49582264 ~ 49670289 (+) True G18908
TU23468 lncRNA downstream 1346280 49673085 ~ 49673926 (+) True G18909
AMCG00017147 mRNA upstream 106100 48212653 ~ 48216163 (+) True AMCG00017147
AMCG00017144 mRNA upstream 148910 48170296 ~ 48173353 (+) True AMCG00017144
AMCG00017143 mRNA upstream 178785 48133618 ~ 48143478 (+) True AMCG00017143
AMCG00017142 mRNA upstream 260036 48012012 ~ 48062227 (+) True AMCG00017142
AMCG00017140 mRNA upstream 371479 47903682 ~ 47950784 (+) True AMCG00017140
AMCG00017154 mRNA downstream 25591 48352396 ~ 48352746 (+) True AMCG00017154
AMCG00017156 mRNA downstream 34543 48361348 ~ 48447697 (+) True AMCG00017156
AMCG00017155 mRNA downstream 128690 48455495 ~ 48460635 (+) True AMCG00017155
AMCG00017157 mRNA downstream 148563 48475368 ~ 48476484 (+) True AMCG00017157
AMCG00017161 mRNA downstream 458363 48785168 ~ 49023630 (+) True AMCG00017161
TU22550 other upstream 3666165 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 4190661 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 5924476 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 9818631 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 14221400 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 1075914 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 1386719 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 2225075 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 2232645 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 4487448 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile