RNA id: TU23309


Basic Information

Item Value
RNA id TU23309
length 2582
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G18791
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49206808 ~ 49211256 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAAACCAGGAAGTAAAGTGGAGATGGCGTTGCAATATGGTGCTCAGGGATTTTGTAATGTGTATCTTCTTTTATGGTTATTATTTGATGACGTGGAGGGACACATAATACACAAGACACGTTTGCTAAGATATATGCGTAAAGAGCTGGTGGGAGAGAAAGACATTCTAACCGGAACCGTGTTTCCTGACGACGGTCCCTCACAGAAACCTGTTGCTGCACTTCAGGTGAATATCACCTGCTCGACCTAAACATGGCACAGCAAGGTTAGGCTCCACCCCGGGGTTATAATCGCTGTGGTGGTTGTTTCCTCCCTTGCAATCTTAGCTGCTTGCTTTATTATCAGAAAATATTGCTGCCTCCGCAGCAATGCAGCCTACAGGTACTCTGAACTAAGAGAGCAGGAGGAACAGCACACAGCCGATGAGCTAGACAACAGCTCTGCGGACAGAATGCTTTATAATGACGACTCTGATGAGGTGAGGCATTATTTGGCTAATCTGTTCCCTTGTTTAGGCAAAgtcacttaaaatgtaaatcagaaaATTAGAAATAAAGGGATTGTGAAGTTTGTCAGTACATTAGTATTGTAGTAAAATACCACAACTTAAATATCCGCCTGGCATTTAGATTACCTTTGAGACTCGTGGTGGTTTAGTCACAGAGAATGAATTAATGGCTTACAAGACAcggtttaaaatgttaataaataacattgacaactagcagaaataaacacaaggactttgattaacaaaatatagaCCTACAACAtcaaactttaaataataaatccttTTAAACTTTGGCCTGGATCAAATGAAGTCATTGATCAGCACGCCAAAGGGAATTCTGAACCCAGCGCTTGATGGCAGTTTTCTGTGGTGTCGACTCAAGGAGCCTCCGAGAATCAGAAAGCCATTAAGTGACATATTGGAATATGCAAATGACAGTTGGTGGAACATTGTTTTAATACGATTCTTTGTGAATGTGCCATAACACTATCACTACTACTTGAACTAAGAACATTTTATTCCTAGAAACTAGtttacattataattgtgtGGAGTTACTGGTACAAATTCTGAAACTTCAGTTAATGTATTCAGTGTACCTTCCATATGAGCTGTATTACTGGTGGCTTCaggtttagttatttatttattttctggtaaTAGAAAGTCTGACATCAAATGTttgatgttaaattaaataacttttctttttcccccccacagGATTTATTAGAATGAAACAATTCACTtcacttcagaaaacaaaacttaaaccccaccagaaagtatttttttttccaaagaacaAGATGATCTCAGGGATAAAGATGATTTAtgtaactatttaaatataatctaatttATAGTCAACAGAAATTAGTTCTGGAGCGTTTTTCTCTTGTGAATGACTTCTCATTTCACAATATTGATTGCCCCTAAGCTGAAACTTTTTTTCTAATTGCAATGGGTTAACAGTTTGATTTGtgatcaaaacacacacacattattggACAGCTCTTCTAAGCTTTAAATTGGAAACACAATTTGCACAATTTCtacataaaaatgtgtattactattattattattattattattattattgttattattatagcaggtttgtattttgtttaggcTCTTGACATCTCATTGTAGAAATGCAGTGCCCCTGCATGTGATTTAGTAAGACGTGAAGCAAATGTTGCTGCTGGCTCCAAGCTTATTAAATCTGGGTCAGTATCTTTATCAATTTCCcccaacaatatttttttgtactgcTCGTGCCTTTCATCACCGCTACTGTGTATATCAGCCACACAGGATATAGCTTTGTCTTTGAGCCTGTTTGTGTGTACTTCGTTATTTTTATAGCTTTGTACCTCATCAtttatctgtatgtgtgtgtttgtcttatttttaaacactctACAATATACAAGATACCTGATTCTGTATCTTAGTGTTTTCATGACATTGCTTGTTACATACCAATAACTAGGAAATAATACTTTGAATTTTGACATAAAATTATATTCTCTGAATTAACATAAATGACAAATGTTACATACTTGTACACAGCAAATTAGGTTGTTAATGGAATTAAGATTAAAACCATGTTTGCTGATAACATACAAAACCCTTCTTTATATAGCAAATTAAGAATAAACATTCCTAATTCCTAAAAAAATATGGTCATTTCATAAAGTTCCCACTTGAATGAGTGTCAAAGtctgaaatgaagaaagagCAATATGAATGTATTCTAGTcctaagaaaatgtatgtacacCACTGGATTTCGGTAGTGTGGAAAAACaccaaagtgaaaaatatatctttgtattttgcacaagtttattattgcacatttacaaaaactactaaacatatatatatgagaacTACTTCTGCAAATGTACATAAATagtaaatgtaatgaatacaaGCAATGGAGAATGAGGAATTTTAACAGACTTTAACTTGCACAGACAAGAGTGTCTTTAGCCATTACAGCTAAGACTTActacaatgtatatattgtttttcatatcctttttttctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23215 lncRNA upstream 880003 48322263 ~ 48326805 (+) True G18722
TU23088 lncRNA upstream 1141790 48062399 ~ 48065018 (+) True G18607
TU23063 lncRNA upstream 1352150 47854392 ~ 47854658 (+) True G18582
TU23000 lncRNA upstream 1727552 47478978 ~ 47479256 (+) True G18538
TU22914 lncRNA upstream 2168285 47028787 ~ 47038523 (+) True G18470
TU23352 lncRNA downstream 169347 49380603 ~ 49382195 (+) False AMCG00017167
TU23406 lncRNA downstream 225008 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 371008 49582264 ~ 49670289 (+) True G18908
TU23468 lncRNA downstream 461829 49673085 ~ 49673926 (+) True G18909
TU23626 lncRNA downstream 943102 50154358 ~ 50154694 (+) True G19040
AMCG00017165 mRNA upstream 2666 49141599 ~ 49204142 (+) True AMCG00017165
AMCG00017161 mRNA upstream 183178 48785168 ~ 49023630 (+) True AMCG00017161
AMCG00017157 mRNA upstream 730324 48475368 ~ 48476484 (+) True AMCG00017157
AMCG00017155 mRNA upstream 746173 48455495 ~ 48460635 (+) True AMCG00017155
AMCG00017156 mRNA upstream 759111 48361348 ~ 48447697 (+) True AMCG00017156
AMCG00017163 mRNA downstream 601 49211857 ~ 49221883 (+) True AMCG00017163
AMCG00017164 mRNA downstream 26646 49237902 ~ 49252687 (+) True AMCG00017164
AMCG00017162 mRNA downstream 54205 49265461 ~ 49278686 (+) True AMCG00017162
AMCG00017166 mRNA downstream 149571 49360827 ~ 49368839 (+) True AMCG00017166
AMCG00017167 mRNA downstream 160766 49372022 ~ 49382218 (+) True AMCG00017167
TU22550 other upstream 4550710 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5075206 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 6809021 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 10703176 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 15105945 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 191463 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 502268 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 1340624 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 1348194 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3602997 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile