RNA id: TU23365


Basic Information

Item Value
RNA id TU23365
length 270
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G18827
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49360668 ~ 49360937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCGTCCTGCTGCCGTGTTTACCTGCTTTCCTTCGGCTTTGTGTTTGACCAGGGTCACCTCCCCGTAGCTCCCTTTCCCCACGACTCTTATAAAAGTGTACTTCTCCATACTGCTTCATTGGCCGGTCCCTTTAGCTTTCTATTAGCAATGGGCGAGATGTGTTGGTTTCCAGTTCAAAGCACTTCTCCATTCTTTGCACAATTGCATCAGGGGGTTATGAACCCCAACCAGCCAAAAGTACAACAGGCTTTCTGTCACCAAGCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23201 lncRNA downstream 1123255 48232690 ~ 48237413 (-) True G18709
TU23194 lncRNA downstream 1136350 48224050 ~ 48224318 (-) True G18702
TU23178 lncRNA downstream 1189558 48170158 ~ 48171110 (-) True G18690
TU23134 lncRNA downstream 1295629 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 1306046 48054208 ~ 48054622 (-) True G18651
TU23366 lncRNA upstream 723 49361660 ~ 49361926 (-) True G18828
TU23367 lncRNA upstream 2812 49363749 ~ 49364302 (-) True G18829
TU23368 lncRNA upstream 4269 49365206 ~ 49366441 (-) True G18830
TU23369 lncRNA upstream 6544 49367481 ~ 49368062 (-) True G18831
TU23370 lncRNA upstream 7681 49368618 ~ 49369551 (-) True G18832
AMCG00017168 mRNA downstream 41749 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017160 mRNA downstream 773029 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017159 mRNA downstream 801233 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017158 mRNA downstream 866261 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017151 mRNA downstream 1014917 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017170 mRNA upstream 8639 49369576 ~ 49370958 (-) True AMCG00017170
AMCG00017169 mRNA upstream 15586 49376523 ~ 49383368 (-) True AMCG00017169
AMCG00017175 mRNA upstream 43185 49404122 ~ 49447336 (-) True AMCG00017175
AMCG00017174 mRNA upstream 94557 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017178 mRNA upstream 126260 49487197 ~ 49493167 (-) False AMCG00017178
TU23267 other downstream 866319 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6496052 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8143437 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11301729 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 11301729 38054665 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2069918 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2084650 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2084650 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2495309 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3497653 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile