RNA id: TU23367


Basic Information

Item Value
RNA id TU23367
length 554
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G18829
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49363749 ~ 49364302 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAGCTCAGGTGTCTTATTTTGGGTGTCGATACTCTGAAGGAGTTTCATCGTGTCATCTTTTTCATCCATGTCAACAGGATGATTCAGTTTGTCTGAAGGCAGCTTTGTTTCGTTTGCTGGTTTCAGCTCCTTATGTAACTGAGAATCTCTATCTTCAGATCCATTCGAGACCCTCTTTGACTCTCCACTGGAACAGACATCCGAGAGCCTCTTTGAGCTCCGATCACGTGTCAGATGCTCCCCTTTCGTGGGGTTTCTTTCTTCACCAGGTTTGAGATCAATGTCAATGTTGCTAATGGTTGCTAAGGATGATCCTGTGTCATTCAGAAGCTCCTGACCACACGCTTGCTGGGGTGCTGCTTTTGGAGGAGGGTGTGCTTCAGAGACTGCATTGTTGGCTTTGTTCTGCcgtaaatgtatttcttctttctgtaaaaagacaaatgtgttttgtcaaACTGAAGGtaaacagacatttcaaatgAGCTCAAAACGCAACAAAAGGACTTCACATCAACAAACATGCATGGGAAGTAAATCCCTAATCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23366 lncRNA downstream 1823 49361660 ~ 49361926 (-) True G18828
TU23365 lncRNA downstream 2812 49360668 ~ 49360937 (-) True G18827
TU23201 lncRNA downstream 1126336 48232690 ~ 48237413 (-) True G18709
TU23194 lncRNA downstream 1139431 48224050 ~ 48224318 (-) True G18702
TU23178 lncRNA downstream 1192639 48170158 ~ 48171110 (-) True G18690
TU23368 lncRNA upstream 904 49365206 ~ 49366441 (-) True G18830
TU23369 lncRNA upstream 3179 49367481 ~ 49368062 (-) True G18831
TU23370 lncRNA upstream 4316 49368618 ~ 49369551 (-) True G18832
TU23442 lncRNA upstream 125384 49489686 ~ 49493305 (-) False AMCG00017178
TU23444 lncRNA upstream 125384 49489686 ~ 49494144 (-) True AMCG00017178
AMCG00017168 mRNA downstream 44830 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017160 mRNA downstream 776110 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017159 mRNA downstream 804314 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017158 mRNA downstream 869342 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017151 mRNA downstream 1017998 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017170 mRNA upstream 5274 49369576 ~ 49370958 (-) True AMCG00017170
AMCG00017169 mRNA upstream 12221 49376523 ~ 49383368 (-) True AMCG00017169
AMCG00017175 mRNA upstream 39820 49404122 ~ 49447336 (-) True AMCG00017175
AMCG00017174 mRNA upstream 91192 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017178 mRNA upstream 122895 49487197 ~ 49493167 (-) False AMCG00017178
TU23267 other downstream 869400 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6499133 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8146518 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11304810 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2066553 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2081285 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2081285 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2491944 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3494288 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile