RNA id: TU23368


Basic Information

Item Value
RNA id TU23368
length 1236
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G18830
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49365206 ~ 49366441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCTCTCCGTTAGTAACGACATCGGACACAGACCGGCTGACTGTAGTGGCCGGATTGTTGGGTGGCTTGTCCACGGTGACTACACTACATGAGGCTCGTGTCGGTGCAGGAAGtacttcagaataaaaacaaatattgcgATTAATTATTGATACTGGACATTATGAGGATTTTGTACATCACCGTTGGTAAGGGCATCAGCTCAGATGTTCATATTTTAACTTATGAAATTtatgaaattataaaattgCTCTAATATCTTTAGGTCCTTTCAAAAGACAGCATCAACCAAACCAACCTGTGTTGTAGTGCTAGACTGATCCCATTGACGTAAATATCTGGTTGGTTGGTTGTACATTTGCCAACCTTTCCTAAGAGTGAGGAGTTCTGTTTTTCGATAAATTAGTTTTGGCTTAATCTGAACTGCAGCATCTTGGTCATGTGTGTGCTATCCAATGTCCCCAAAGTGGGTCTATGGTGTCTTTTTCTTTACCAGGATGGCAGAACTCCTCCTGAGACAGTTTGAGTCGTCTTCGTTCTCTGGCCGATAGGGGACGGTCCTTAAACAAGCGTTTTCAAGATacatgtcaatttaaaaaaacataagcagTTCTCTTAACATGAAAGAGGATTAATGAATATGAAAAGATTTTAcctaaactaaacataaatctattctgcattttattaacaGCTTCGTGACCATTACAAGGGTATGGACATTTGAAATTAGGCCAATCAACACCACTACATACCAAATGTTCAGAAAGGCATGTTAACATTTACACAACAATGACAGGAAACATCAGAGAAAGAGGATCAAACCTGTGACACTGATACTGCACTATCTTCAGAGCTGCAAAGAGAGGGGGATATTTCACTTTTCGCCTTTTTCATATTCCCACGGCTTTTCTTCACGTGTAACAGGTCAGCATTTCTAGGGGGAGATGGTAAAGGCCTTGGATGGATAACTTTAAACTAAAgaagggaggggaaaaaaataattaaagctgaCACCAAGATGCAGAAGTCCACAAAAATTGATCAAGCAGACTATAACAATGGCTTGATACCACTGAATGACTCTTTTACCGACCCGGTCTTCACTCTCCTTTGCCATCTCTCTGGTCTTTTGCCTGTGCTGCCGGGAGAGGGAGGGCTCGGACGCCGACGCGTGCGGTTGCAGCTGGGAAGCATCCTGCCCAACTGGGGGAGCGACATCCACATGTAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23367 lncRNA downstream 904 49363749 ~ 49364302 (-) True G18829
TU23366 lncRNA downstream 3280 49361660 ~ 49361926 (-) True G18828
TU23365 lncRNA downstream 4269 49360668 ~ 49360937 (-) True G18827
TU23201 lncRNA downstream 1127793 48232690 ~ 48237413 (-) True G18709
TU23194 lncRNA downstream 1140888 48224050 ~ 48224318 (-) True G18702
TU23369 lncRNA upstream 1040 49367481 ~ 49368062 (-) True G18831
TU23370 lncRNA upstream 2177 49368618 ~ 49369551 (-) True G18832
TU23442 lncRNA upstream 123245 49489686 ~ 49493305 (-) False AMCG00017178
TU23444 lncRNA upstream 123245 49489686 ~ 49494144 (-) True AMCG00017178
TU23513 lncRNA upstream 341225 49707666 ~ 49709260 (-) True G18945
AMCG00017168 mRNA downstream 46287 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017160 mRNA downstream 777567 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017159 mRNA downstream 805771 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017158 mRNA downstream 870799 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017151 mRNA downstream 1019455 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017170 mRNA upstream 3135 49369576 ~ 49370958 (-) True AMCG00017170
AMCG00017169 mRNA upstream 10082 49376523 ~ 49383368 (-) True AMCG00017169
AMCG00017175 mRNA upstream 37681 49404122 ~ 49447336 (-) True AMCG00017175
AMCG00017174 mRNA upstream 89053 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017178 mRNA upstream 120756 49487197 ~ 49493167 (-) False AMCG00017178
TU23267 other downstream 870857 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6500590 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8147975 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11306267 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2064414 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2079146 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2079146 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2489805 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3492149 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile