RNA id: TU23614


Basic Information

Item Value
RNA id TU23614
length 4416
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G19030
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50060847 ~ 50071504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTATGGACTACTGTATGCCATTACACAGAGAGTTGATTCCTCGCCTTCGCAGGAAGATTGAACGAATCGACAGCTGAAGCTCTCCGTTAAGACCCCAATAAGACGTTGAGCCGGATCCAAAAGGCATTTTTATAACTGCCAACAATACTGAACTGGTCTccaaacagcaacaacagtcAGGAAGAATCATTCCCACTATTGGAATAGATGATTTTGTTACCCATAACCTCAGAGAGAGATTGACATGCGAGATCACAGTTTTGCCGCAGGGTGTGTTTGTATTGGAGTTGCTGTCTGCCCAGTGTGATCCCTGAAACTCTGGCACTGTGTGAACTCCTGAAGGAAGATAAGGAGCTCCTGCCTCCAGATATCAACACCATGTGATGCCTACTCAACCGTCTACTCCTTTAACTATCCAATTGCAGTTTCATAGCTACTTATATTTTcatgcaatgcattttaaataatgtacattataaTAGTAGGCATTTCTTTTGTCTGTACCTTAATAATAtgctcattaaaaaatagatatgtattcatataataaGCATAGATCggaatgtgttttattgagATATATGTTCTGGTGACTGTAGTTTTCTATATTCTATTGCTATgctcttgttgttttcctttaaattcTGTTTAGCAGAGATAATAATAGCTATTTATTATATGACAATTTCCTAATAtgatttgtgttattgtgtgtgtgtgagagagattaAAACTGGGACAAAACATCATGCTGGCCTGTTTCAGTGCAGTCTTTTGAGAGAAGTGAAAAATTATCAATTCTGGACATTTCAAGTCTCCCTGTCCTCTCTAAACAGTCCTGTACTCATGAAACTCATGTAGTAAAGTTGttcattaaagaaacaaaaggaaacccCGATTCCCTGGCTCCTGTCACACCCACTGGGGCTGCTCTGTGTCGTTCACGTGGGCTCTTCTACACCCTTTGAACTTGGTGATGGAATACGACTGTAGCCATTTTCTGCTGTAGTAAACAAAACACGACCAAAATTATTCAGCCCATCTCTGTTCTAATTTACGGTTTAATTGAGATTTAAAGTCTCTGTATAAGTAATAACAAGTGTAAGAATATAAAACGAGGTGCCTGTAAATGGACTTGTGGACAGATTCCTCCGAATCTTTGCTTTCCAGCATAAAAGTAGTCCCTCAGTGTAGAGGCCTAGAGTGGATTAAAACAAACGTCACACAAATGTCACACTGGTGGAAGGAGACCATGTTTTCATGCTGCTCTGGAAATTTATTTAATGCTCCGCTTTTTTCCACTTGTGCTCCTGCCAGGAATTATGTTATAGACAGTAAGCAGCAAGAGTCACAGTTCATTACTTTCttcaaactataaaataatttacatcaCATTGTTTACTTACTTTTGAAACCACAAACATTCCAGCAACACACTCTAGGGACAGGGGGGTAACAATCAGAAAGCATGACCTTTTGCATAGTATTAAATGAACAGAGACATTGAGttctttatttacaattattgtcTAGATAAAAAAATTCATAAAAACAAGATGGATGAACACATATCATTTACCCATACATGGTTAGACTGCCTAATATACCActggcattttttttcttctttttttttgttccacaAATTCATGCTGCTAAGTACAGTACATAGAAGCATTTATGTATTGCAGTGATTTGTTTAATCAATTGGTCAtgttcttttcatttgtaaGCAACTGCATCCAGGATTTAAAGGTACAAAGTGTAACACTTTGTGCAGAATACTTGACCTGTACTTGTGACTTCATAAATAAGCTAAATTggactttaaaacaaaaagcgGTGTCATATATACATCACACACTCCTTGCCCACAGAAGCCTGAATTTATGTGCATCTCAGATTAAGTAGATTTTCTATTTACAAAGAATACACAACTTAATgccatttattgttttaaagctgGATTTTTTGGTTAATGTACAGATGTTGTTTTTAGGAGTTGGCTGAAGTTTGCTTTTCtctgaaaatgtagaaaaaaagaaaaggggggaaaaagacagaaaataatttaaccaGGACAGACAGAAACAACCTCTCCTGTGATTGTTAAGTATCTTCTTTTAAATTATCCTTCGGTAAAGTTTCACAAATGCCTGAGCCAACCTTTAACGCTAATCACCCCTTAGATTTGCTTAGGTTTACACAAAACTAACACAGGCCAATAAATTCAAATCCAAGTAGAAAATGGGGTTTGACCTGTATGTAGAATAAGAGGACTGCGTCATGCTGCTTTCAAAGCCCcattaataacagtaaaaataataattatacaaggGCTGTTAACATCTTGATGCATTTATCCTCCATTATAACCTTTCAAATGACCTTTCCTATCCTGTAGAAAGCACAATAAATAGTTAACAACTACGGTTGAGATGCGAGAGTATATTTAGTGATTGCAGGAAGACAAGCTTGGTTAGAACCACACAAAAGCACGTCTAAATATACACCACAGAGATTTTCATTCATATCCGGATAGTGCAGAAaatgatcatttttaaaaaagtcCAAAGTAACAATCCATAGTGTTATTTTTAGTTGTTCAAAATGCCAACAGCCCTGAAGCTGTGATttatcttctttaaaaaaaaaaaaaatctaaaccactaaaattaaaataaaataaaataacaatataccACAAGATTTCAACACAACTTTTGATTTCCATAGAGATAACGCCAAATATAACTTAGTTTGCAATTGTTTCTAATATCATAAACCCATCACAGCCTTTGATGGTGAcacatcatttaaaacatttcagttaaacaAGCAGTGTTAATATCAGCAGACAGTTCAATAAAATCAGTCCAGGACGGCCCTCCCAGGTTTGAGATTGAccgaaaaatgtatttcaagcgTTTCATATCAAAAGAaagcaaggaaataaaaagaaacctaAGTCTTAAGATTTGTATTTGGAAACAAAGGAAGCCTCTCAGATTTGTTCCCCACAATAATGTAATACTAAGATGCCACGTTAAATAATATATCCCAATATATTTTGGCTTCTCCTGTTCTCTTCTAAAAATATCtacaatatttaacaaaatagcAGGCAAATTCAGTACACAGTTTGTAATAAAACACCTAGAGTCCAATTACAGAAGTACTCAACCACTTGAGTTGTTCCTACTAGACTGGTTTGTACCCTACAAATAAACAAGGAAGTTATCTACAGGTTttgtaaacaaattacattctCTTTAGGACATAAATAAGTTAAAGTAGTAAGAGCCATTTAAGCAGAAACAAGGCAACATGCCAACAAACGAAGAAGATaaactctgtatatatataatatgtttaataataaatgctaTTATTTATAGGTTTCTCTTTCCAATTGGTGCAAATCTACTGTGCAAGTTGAGCCCTGCAACTttaatacacttttatttttcgattaattaaataaatctatacaATTAAGTCCATGCCACACAAGCACTTCAAAAAGTCACAGACCAGTGAATCGGATAAGCTGTCTTAAATTCCACAGCTGTCCCCACCGACAAGTAAAgtaaagatttaattaaattaaaaaaagaaaagaaaaagaaaaaaactgggTAATGTACATTCATGCAGGAGGAAagttctttaaataattattgtcaTTGTCTTCGGGAAAAGTGAGAGGGAGGTTTATACCTTCGCTAATCACTCTGCGGTGATCGCCTCCTTCGCCACACTGAAAAAGCTGCACGTGTAGAACAGTTTTTAAGCCAGCagtttattcatattaaatgtttttgtttgtcttgttgcgtcatttgtcatgttttagggttttgttctgtttgtttttttgcaaagaCATGTTCAGCTAAAGCGAAGTCTCCAGGCTGTGTAGTGGACTCCCAGGACTTGAAGAGGTAGCTGATTTACTGGTGTCGGTGGTGAGATTAATTCCACTATCGATCgcattgttgttcttgttgggTGAGGAGGGCTGGCTGGAGTTCTGCTTGAGCGCCGCGTCCTCTTCGATGTCAGTATCGTCTATCAGAGGGATGTGGGGCTGGGAGTCTTCTATTCTAAACTCGGGGTGAGTCATGAAGTTGTGAATGGAGGTTCTCGATTCAGGTTTTTCCAGACCCTCGTAGAGAGAGCTACGGAATGCCTTCACGACGCGTATCTGAAAAAGACAAGCCACAAACCCCGAGGTCACAACCAGAAGCTGAGCCGCGGGAGTCTTGTTCCAGAGTCATCCGACAAGATAGAAACAGCACATGGTTAAGGTAGCGCAGATAGCTGAAGTCCACAGTCACGAGACTACTGAAGCATACACAACTCACTCAGTTTCGTGCATTGCGGGATTTCGGTTTGGGACtgcaataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23548 lncRNA downstream 295655 49763197 ~ 49765192 (-) True G18970
TU23537 lncRNA downstream 333912 49726320 ~ 49726935 (-) True G18962
TU23536 lncRNA downstream 335172 49725197 ~ 49725675 (-) True G18961
TU23513 lncRNA downstream 351587 49707666 ~ 49709260 (-) True G18945
TU23444 lncRNA downstream 566703 49489686 ~ 49494144 (-) True AMCG00017178
TU23629 lncRNA upstream 83926 50155430 ~ 50155834 (-) True G19043
TU23637 lncRNA upstream 116390 50187894 ~ 50190884 (-) True G19049
TU23643 lncRNA upstream 198904 50270408 ~ 50270657 (-) True G19055
TU23670 lncRNA upstream 257674 50329178 ~ 50331737 (-) True G19081
TU23734 lncRNA upstream 459697 50531201 ~ 50621932 (-) True G19130
AMCG00017191 mRNA downstream 215721 49844467 ~ 49845126 (-) True AMCG00017191
AMCG00017186 mRNA downstream 325500 49727583 ~ 49735347 (-) True AMCG00017186
AMCG00017187 mRNA downstream 354326 49697995 ~ 49706521 (-) True AMCG00017187
AMCG00017179 mRNA downstream 385013 49669201 ~ 49675834 (-) True AMCG00017179
AMCG00017180 mRNA downstream 407626 49644147 ~ 49653221 (-) True AMCG00017180
AMCG00017200 mRNA upstream 260267 50331771 ~ 50351799 (-) True AMCG00017200
AMCG00017199 mRNA upstream 305761 50377265 ~ 50384569 (-) True AMCG00017199
AMCG00017203 mRNA upstream 375881 50447385 ~ 50456112 (-) True AMCG00017203
AMCG00017208 mRNA upstream 452054 50523558 ~ 50526003 (-) True AMCG00017208
AMCG00017214 mRNA upstream 500612 50572116 ~ 50593081 (-) True AMCG00017214
TU23267 other downstream 1566498 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 7196231 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8843616 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 12001908 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 1359351 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 1374083 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 1374083 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 1784742 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 2787086 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU257034 True 913 lncRNA 0.56 3 NC_048567.1 11646510 ~ 11659065 (-)
rainbow trout (Oncorhynchus mykiss) TU1722055 False 2082 lncRNA 0.42 4 NC_048581.1 92447734 ~ 92449941 (+)
mexican tetra (Astyanax mexicanus) TU257034 True 1369 lncRNA 0.39 2 NC_035918.1 13941186 ~ 13943399 (-)