RNA id: TU23651



Basic Information


Item Value
RNA id TU23651
length 696
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G19062
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50351252 ~ 50351947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aataacaatgcaaatacaaaacaccCAGCTGTGATTATGAAGAGCTCAGTATTTTCAGGAAACCGACTACATCCGAATGCTAATAAATTCGGATTAGTGCGggaccaaaacaaaaagtgcaataaaGCGGTTTACCGTCGTAGCACAGGATCCCGATGTTGTTGTTCATCTTGTCCAGATACTGGTAGTTCAACAGGTCCATTTTCGTAAGAAGCATTGATCGGGAGGGCAAAAAGACCAGCTTTTTCGCGTTGCACTTCCCGAGCTAAAGGCCCAGCCTTCAACTTTCCTCGCAGCCGAGCACCGCAGCACAAGCCCGCAGCTCCAGGCCGACGCCGCGCCGAGACTGGGCTTCTCTCGACGACCGCCCTTGAGGTTTTTGGAAACTTGGGGTGACTGCTTTACTTCTCAAAGGCTGTGAAAGTGTGCTGCTGGGACAAAAGAGACGCGCCAGTCGTCCTCACAGCCCGCTGCAAGTTAACTGCACTGCCATGCAGGCTATGCTCGGTATGGCTCGTATGTGAGCAGTTTCCTCCGCTGGGGCTGCGGCCACTGCGCCTGCGCGTCACATCCCTGGAGCGCCTCAAATGTCAGGGATTGTTTCTGCACAAGATCAGCCTCCAAACGCACCGAGGCCCAGAGGGGCACGAAACATCTCACACAAAGGGCTCTTTTCAAGGCTGCCGTGTCACCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23650 lncRNA upstream 9102 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 16746 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 17886 50332466 ~ 50333366 (+) True G19058
TU23628 lncRNA upstream 195427 50155453 ~ 50155825 (+) True G19042
TU23626 lncRNA upstream 196558 50154358 ~ 50154694 (+) True G19040
TU23711 lncRNA downstream 207503 50559450 ~ 50563278 (+) True G19114
TU23752 lncRNA downstream 279431 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 288640 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 375793 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 785346 51137293 ~ 51138835 (+) True G19245
AMCG00017198 mRNA upstream 47627 50271231 ~ 50303625 (+) True AMCG00017198
AMCG00017197 mRNA upstream 84103 50265659 ~ 50267149 (+) True AMCG00017197
AMCG00017196 mRNA upstream 160472 50178455 ~ 50190780 (+) True AMCG00017196
AMCG00017193 mRNA upstream 289887 50045218 ~ 50061365 (+) True AMCG00017193
AMCG00017194 mRNA upstream 319870 50011932 ~ 50031382 (+) True AMCG00017194
AMCG00017204 mRNA downstream 51372 50403319 ~ 50403624 (+) True AMCG00017204
AMCG00017201 mRNA downstream 89600 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017202 mRNA downstream 107016 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017205 mRNA downstream 149096 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017206 mRNA downstream 165095 50517042 ~ 50522542 (+) True AMCG00017206
TU23515 other upstream 629781 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 947618 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5695154 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 6219650 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7953465 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 199933 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 207503 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 2462306 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2469114 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2983962 53335909 ~ 53339655 (+) True G19683

Expression Profile